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Organic Chemistry
F I F T H E D I T I O N
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Organic Chemistry
F I F T H E D I T I O N
Marc Loudon
Purdue University
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ROBERTS AND COMPANY PUBLISHERS 4950 South Yosemite Street, F2 #197 Greenwood Village, Colorado 80111 USA Internet: www.roberts-publishers.com Telephone: (303) 221-3325 Facsimile: (303) 221-3326 ORDER INFORMATION Telephone: (800) 351-1161 or (516) 422-4050 Facsimile: (516) 422-4097 Internet: www.roberts-publishers.com Publisher: Ben Roberts Copyeditor: John Murdzek Proofreader: Gunder Hefta Production Editor: Susan Riley at Side By Side Studios Interior Designer: Mark Ong at Side By Side Studios Cover Concept: Gregory Gatto Cover Rendering: Emiko-Rose Paul and Quade Paul at Echo Medical Media Cover Designer: Mark Ong at Side By Side Studios Compositor: Side By Side Studios Printer: RR Donnelley 2009 by Roberts and Company Publishers Reproduction or translation of any part of this work beyond that permitted by Section 107 or 108 of the 1976 United States Copyright Act without permission of the copyright owner is unlawful. Requests for permission or further information should be addressed to the Permissions Department at Roberts and Company Publishers. ISBN: 978-0-981-5194-3-2
Library of Congress Cataloging-in-Publication Data Loudon, G. Marc. Organic chemistry / Marc Loudon. -- 5th ed. p. cm. Summary: "Introduces organic chemistry through a mechanistic approach within a functional group framework. Contains 1,668 exercises--many of which are taken directly from the scientic literature-that encourage readers to analyze and synthesize chemical concepts. Includes modern topics such as alkene metathesis, Suzuki and Stille cross-coupling reactions, and examples drawn from contemporary medical practice."--Provided by the publisher. Includes index. ISBN 978-0-9815194-3-2 1. Chemistry, Organic--Textbooks. I. Title. QD251.3.L68 2009 547--dc22 2008046105 10 9 8 7 6 5 4 3 2 1
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Contents
Preface Reviewers and Consultants About the Author xxxi xxxvi xxxix
1
1 1 1 2 3 3 3 5 9 13 13 14 20 22 23 23 25 28 29 32 32 36 37 37 40
1.2
Classical Theories of Chemical Bonding A. Electrons in Atoms B. The Ionic Bond C. The Covalent Bond D. The Polar Covalent Bond Structures of Covalent Compounds
A. Methods for Determining Molecular Geometry B. Prediction of Molecular Geometry
1.3
Resonance Structures Wave Nature of the Electron Electronic Structure of the Hydrogen Atom A. Orbitals, Quantum Numbers, and Energy B. Spatial Characteristics of Orbitals C. Summary: Atomic Orbitals of Hydrogen Electronic Structures of More Complex Atoms Another Look at the Covalent Bond: Molecular Orbitals A. Molecular Orbital Theory B. Molecular Orbital Theory and the Lewis Structure of H2 Hybrid Orbitals
A. Bonding in Methane B. Bonding in Ammonia
1.7 1.8
1.9
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42 43
ALKANES
2.1 2.2 2.3 Hydrocarbons Unbranched Alkanes Conformations of Alkanes
A. Conformation of Ethane B. Conformations of Butane
46
46 48 50 50 53 57 57 58 59 64 66 67 70 70 73 74 76 78 81 81 82 83 83
2.4
Constitutional Isomers and Nomenclature A. Isomers B. Organic Nomenclature C. Substitutive Nomenclature of Alkanes D. Highly Condensed Structures E. Classication of Carbon Substitution Cycloalkanes and Skeletal Structures Physical Properties of Alkanes A. Boiling Points B. Melting Points C. Other Physical Properties Combustion Occurrence and Use of Alkanes Functional Groups, Compound Classes, and the R Notation
A. Functional Groups and Compound Classes B. R Notation
2.5 2.6
87
87 87 88
89
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3.2
Electron-Pair Displacement Reactions A. Donation of Electrons to Atoms That Are Not Electron-Decient B. The Curved-Arrow Notation for Electron-Pair Displacement Reactions Review of the Curved-Arrow Notation
A. Use of the Curved-Arrow Notation to Represent Reactions B. Use of the Curved-Arrow Notation to Derive Resonance Structures
90 90 91 94 94 94 96 96 98 101 103 104 106 108 108 110 111 116 117
3.3
3.4
BrnstedLowry Acids and Bases A. Denition of Brnsted Acids and Bases B. Nucleophiles, Electrophiles, and Leaving Groups C. Strengths of Brnsted Acids D. Strengths of Brnsted Bases E. Equilibria in AcidBase Reactions Free Energy and Chemical Equilibrium Relationship of Structure to Acidity A. The Element Effect B. The Charge Effect C. The Polar Effect Key Ideas in Chapter 3 Additional Problems
3.5 3.6
122
122 123 125 128 131 131 134 139 140 141 141 144 147 147 148 149
4.2
Unsaturation Number Physical Properties of Alkenes Relative Stabilities of Alkene Isomers A. Heats of Formation B. Relative Stabilities of Alkene Isomers Addition Reactions of Alkenes Addition of Hydrogen Halides to Alkenes A. Regioselectivity of Hydrogen Halide Addition B. Carbocation Intermediates in Hydrogen Halide Addition
4.6 4.7
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151 154
4.8
Reaction Rates A. The Transition State B. The Energy Barrier C. Multistep Reactions and the Rate-Limiting Step D. Hammonds Postulate Catalysis
A. Catalytic Hydrogenation of Alkenes B. Hydration of Alkenes C. Enzyme Catalysis
157 158 160 162 164 166 168 169 172 172 174
4.9
178
178 181 181 183 186 187 187 190 194 196 200 200 201 202 207 211 214 216 219 220
5.3 5.4
5.5 5.6
5.7 5.8
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PRINCIPLES OF STEREOCHEMISTRY
6.1 Enantiomers, Chirality, and Symmetry
A. Enantiomers and Chirality B. Asymmetric Carbon and Stereocenters C. Chirality and Symmetry
226
226 226 229 229 231 234 235 235 238 239 241 242 246 249 251 253 253 255 257 259 263 263
6.2 6.3
Nomenclature of Enantiomers: The R,S System Physical Properties of Enantiomers: Optical Activity A. Polarized Light B. Optical Activity C. Optical Activities of Enantiomers Racemates Stereochemical Correlation Diastereomers Meso Compounds Enantiomeric Resolution Chiral Molecules without Asymmetric Atoms Conformational Stereoisomers A. Stereoisomers Interconverted by Internal Rotations B. Asymmetric Nitrogen: Amine Inversion Drawing Structures That Contain Three-Dimensional Information The Postulation of Tetrahedral Carbon Key Ideas in Chapter 6 Additional Problems
6.11 6.12
268
268 269 269 273 274
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7.3 7.4
277 281 281 283 284 285 288 288 289 290 290 292 294 296 298 298 300 301 301 304 305 305 306 308 312 313 314 316
7.5
Cyclopentane, Cyclobutane, and Cyclopropane A. Cyclopentane B. Cyclobutane and Cyclopropane Bicyclic and Polycyclic Compounds
A. Classication and Nomenclature B. Cis and Trans Ring Fusion C. Trans-Cycloalkenes and Bredts Rule D. Steroids
7.6
7.7
Relative Reactivities of Stereoisomers A. Relative Reactivities of Enantiomers B. Relative Reactivities of Diastereomers Reactions That Form Stereoisomers
A. Reactions of Achiral Compounds That Give Enantiomeric Products B. Reactions That Give Diastereomeric Products
7.8
7.9
Stereochemistry of Chemical Reactions A. Stereochemistry of Addition Reactions B. Stereochemistry of Substitution Reactions C. Stereochemistry of Bromine Addition D. Stereochemistry of HydroborationOxidation E. Stereochemistry of Other Addition Reactions Key Ideas in Chapter 7 Additional Problems
323
324 324 326 330 332 333 333
8.2 8.3
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8.4
Solvents in Organic Chemistry A. Classication of Solvents B. Solubility Applications of Solubility and Solvation Principles
A. Cell Membranes and Drug Solubility B. Cation-Binding Molecules
339 339 340 346 346 351 355 356 358 358 359 361 361 362 364 364 365 368 371 372 373
8.5
8.6
Acidity of Alcohols and Thiols A. Formation of Alkoxides and Mercaptides B. Polar Effects on Alcohol Acidity C. Role of the Solvent in Alcohol Acidity Basicity of Alcohols and Ethers Grignard and Organolithium Reagents A. Formation of Grignard and Organolithium Reagents B. Protonolysis of Grignard and Organolithium Reagents Industrial Preparation and Use of Alkyl Halides, Alcohols, and Ethers A. Free-Radical Halogenation of Alkanes B. Uses of Halogen-Containing Compounds C. Production and Use of Alcohols and Ethers D. Safety Hazards of Ethers Key Ideas in Chapter 8 Additional Problems
8.7 8.8
8.9
377
377 377 378 380 381 382 382 383 384 386 386
9.2 9.3
9.4
The SN2 Reaction A. Rate Law and Mechanism of the SN2 Reaction
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B. Comparison of the Rates of SN2 Reactions and Brnsted AcidBase Reactions C. Stereochemistry of the SN2 Reaction D. Effect of Alkyl Halide Structure on the SN2 Reaction E. Nucleophilicity in the SN2 Reaction F. Leaving-Group Effects in the SN2 Reaction G. Summary of the SN2 Reaction
9.5
The E2 Reaction A. Rate Law and Mechanism of the E2 Reaction B. Why the E2 Reaction Is Concerted C. Leaving-Group Effects on the E2 Reaction D. Deuterium Isotope Effects in the E2 Reaction E. Stereochemistry of the E2 Reaction F. Regioselectivity of the E2 Reaction G. Competition between the E2 and SN2 Reactions: A Closer Look H. Summary of the E2 Reaction The SN1 and E1 Reactions
A. Rate Law and Mechanism of SN1 and E1 Reactions B. Rate-Limiting and Product-Determining Steps C. Reactivity and Product Distributions in SN1E1 Reactions D. Stereochemistry of the SN1 Reaction E. Summary of the SN1 and E1 Reactions
400 400 400 402 402 404 406 407 411 412 412 414 416 418 420 420 424 424 426 428 429
9.6
9.7 9.8
Summary of Substitution and Elimination Reactions of Alkyl Halides Carbenes and Carbenoids A. a-Elimination Reactions B. The SimmonsSmith Reaction Key Ideas in Chapter 9 Additional Problems
10
436
436 440 443 443 447 448 449 450
10.4
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10.5
Oxidation and Reduction in Organic Chemistry A. Half-Reactions and Oxidation Numbers B. Oxidizing and Reducing Agents Oxidation of Alcohols
A. Oxidation to Aldehydes and Ketones B. Oxidation to Carboxylic Acids
452 452 456 459 459 461 462 465 465 469 471 474 474 476 477
10.6
10.7 10.8
Oxidation of Thiols Synthesis of Alcohols Design of Organic Synthesis Key Ideas in Chapter 10 Additional Problems
11
482
482 482 484 485 488 488 491 492 495 495 497 500 503 503 506 508 508 509
11.2
11.3 11.4
11.5
Preparation and Oxidative Cleavage of Glycols A. Preparation of Glycols B. Oxidative Cleavage of Glycols Oxonium and Sulfonium Salts
A. Reactions of Oxonium and Sulfonium Salts B. S-Adenosylmethionine: Natures Methylating Agent
11.6
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11.7
Intramolecular Reactions and the Proximity Effect A. Neighboring-Group Participation B. The Proximity Effect and Effective Molarity C. Stereochemical Consequences of Neighboring-Group Participation Oxidation of Ethers and Suldes The Three Fundamental Operations of Organic Synthesis Synthesis of Enantiomerically Pure Compounds: Asymmetric Epoxidation Key Ideas in Chapter 11 Additional Problems
12
536
536 536 538 540 540 542 544 545 548 552 552 552 553 556 557 558 558 560 563 566 569 571 571
12.2
Infrared Spectroscopy A. The Infrared Spectrum B. Physical Basis of IR Spectroscopy Infrared Absorption and Chemical Structure
A. Factors That Determine IR Absorption Position B. Factors That Determine IR Absorption Intensity
12.3
12.4
Functional-Group Infrared Absorptions A. IR Spectra of Alkanes B. IR Spectra of Alkyl Halides C. IR Spectra of Alkenes D. IR Spectra of Alcohols and Ethers Obtaining an Infrared Spectrum Introduction to Mass Spectrometry A. Electron-Impact Mass Spectra B. Isotopic Peaks C. Fragmentation D. The Molecular Ion. Chemical-Ionization Mass Spectra E. The Mass Spectrometer Key Ideas in Chapter 12 Additional Problems
12.5 12.6
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13
578
578 581 583 583 585 586 589 592 593 595 596 599 601 603 603 607 611 612 612 614 616 616 619 622 629 632 634 635 636
13.4
13.5
13.6 13.7
Use of Deuterium in Proton NMR Characteristic Functional-Group NMR Absorptions A. NMR Spectra of Alkenes B. NMR Spectra of Alkanes and Cycloalkanes C. NMR Spectra of Alkyl Halides and Ethers D. NMR Spectra of Alcohols NMR Spectroscopy of Dynamic Systems Carbon NMR Solving Structure Problems with Spectroscopy The NMR Spectrometer Other Uses of NMR Key Ideas in Chapter 13 Additional Problems
14
644
644 646
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14.3
Physical Properties of Alkynes A. Boiling Points and Solubilities B. IR Spectroscopy of Alkynes C. NMR Spectroscopy of Alkynes Introduction to Addition Reactions of the Triple Bond Conversion of Alkynes into Aldehydes and Ketones A. Hydration of Alkynes B. HydroborationOxidation of Alkynes Reduction of Alkynes
A. Catalytic Hydrogenation of Alkynes B. Reduction of Alkynes with Sodium in Liquid Ammonia
649 649 649 650 652 654 654 657 659 659 660 662 662 665 666 668 670 671 671
14.4 14.5
14.6
14.7
Acidity of 1-Alkynes A. Acetylenic Anions B. Acetylenic Anions as Nucleophiles Organic Synthesis Using Alkynes Pheromones Occurrence and Use of Alkynes Key Ideas in Chapter 14 Additional Problems
15
676
677 677 680 682 684 684 686 687 690 690 694 696 700 700 702 705
15.2
UltravioletVisible Spectroscopy A. The UVVis Spectrum B. Physical Basis of UVVis Spectroscopy C. UVVis Spectroscopy of Conjugated Alkenes The DielsAlder Reaction
A. Reaction of Conjugated Dienes with Alkenes B. Effect of Diene Conformation on the DielsAlder Reaction C. Stereochemistry of the DielsAlder Reaction
15.3
15.4
Addition of Hydrogen Halides to Conjugated Dienes A. 1,2- and 1,4-Additions B. Allylic Carbocations. The Connection between Resonance and Stability C. Kinetic and Thermodynamic Control
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15.5 15.6
708 709 710 711 714 716 717 718 721 721 728 730 731
15.7
Introduction to Aromatic Compounds A. Benzene, a Puzzling Alkene B. Structure of Benzene C. Stability of Benzene D. Aromaticity and the Hckel 4n | 2 Rule E. Antiaromatic Compounds Key Ideas in Chapter 15 Additional Problems
16
740
740 743 743 743 744 748 748 750 751 753 754 755 756 759 762 762 768 772 776 777 780 780
16.4
16.5
Electrophilic Aromatic Substitution Reactions of Substituted Benzenes A. Directing Effects of Substituents B. Activating and Deactivating Effects of Substituents C. Use of Electrophilic Aromatic Substitution in Organic Synthesis Hydrogenation of Benzene Derivatives Source and Industrial Use of Aromatic Hydrocarbons Key Ideas in Chapter 16 Additional Problems
16.6 16.7
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17
788
789 793 798 799 801 802 803 803 805 807 807 810 813 814
17.4 17.5
17.6
18
THE CHEMISTRY OF ARYL HALIDES, VINYLIC HALIDES, AND PHENOLS. TRANSITION-METAL CATALYSIS 822
18.1 18.2 18.3 18.4 18.5 Lack of Reactivity of Vinylic and Aryl Halides under SN2 Conditions Elimination Reactions of Vinylic Halides Lack of Reactivity of Vinylic and Aryl Halides under SN1 Conditions Nucleophilic Aromatic Substitution Reactions of Aryl Halides Introduction to Transition-Metal Catalyzed Reactions A. Transition Metals and Their Complexes B. Oxidation State C. The dn Notation D. Electron Counting: The 16- and 18-Electron Rules E. Fundamental Reactions of Transition-Metal Complexes Examples of Transition-Metal-Catalyzed Reactions
A. The Heck Reaction B. The Suzuki Coupling
823 825 826 828 831 832 835 836 836 839 845 845 848
18.6
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18.7
Acidity of Phenols A. Resonance and Polar Effects on the Acidity of Phenols B. Formation and Use of Phenoxides Oxidation of Phenols to Quinones Electrophilic Aromatic Substitution Reactions of Phenols Reactivity of the ArylOxygen Bond
A. Lack of Reactivity of the ArylOxygen Bond in SN1 and SN2 Reactions B. Substitution at the ArylOxygen Bond: The Stille Reaction
858 858 861 862 867 870 870 872 874 875 876
18.11
Industrial Preparation and Use of Phenol Key Ideas in Chapter 18 Additional Problems
19
888
890 890 892 894 895 895 897 898 899 901 903 903 904 907 907 910 913 914
19.2 19.3
19.8
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19.9 19.10
Reactions of Aldehydes and Ketones with Grignard and Related Reagents Acetals and Their Use as Protecting Groups
A. Preparation and Hydrolysis of Acetals B. Protecting Groups
19.11
Reactions of Aldehydes and Ketones with Amines A. Reaction with Primary Amines and Other Monosubstituted Derivatives of Ammonia B. Reaction with Secondary Amines Reduction of Carbonyl Groups to Methylene Groups The Wittig Alkene Synthesis Oxidation of Aldehydes to Carboxylic Acids Manufacture and Use of Aldehydes and Ketones Key Ideas in Chapter 19 Additional Problems
20
948
948 948 951 953 955 955 955 957 957 960 960 963 964 965 965 968
20.2 20.3
20.4
Fatty Acids, Soaps, and Detergents Synthesis of Carboxylic Acids Introduction to Carboxylic Acid Reactions Conversion of Carboxylic Acids into Esters
A. Acid-Catalyzed Esterication B. Esterication by Alkylation
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20.9
Conversion of Carboxylic Acids into Acid Chlorides and Anhydrides A. Synthesis of Acid Chlorides B. Synthesis of Anhydrides Reduction of Carboxylic Acids to Primary Alcohols Decarboxylation of Carboxylic Acids Key Ideas in Chapter 20 Additional Problems
20.10 20.11
21
986
986 986 988 988 989 989 991 991 992 994 994 994 995 995 996 996 997 1000 1003 1004 1004 1008 1009 1011 1011
21.2 21.3
21.4
Basicity of Carboxylic Acid Derivatives Introduction to the Reactions of Carboxylic Acid Derivatives Hydrolysis of Carboxylic Acid Derivatives A. Hydrolysis of Esters B. Hydrolysis of Amides C. Hydrolysis of Nitriles D. Hydrolysis of Acid Chlorides and Anhydrides E. Mechanisms and Reactivity in Nucleophilic Acyl Substitution Reactions
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21.8
Reactions of Carboxylic Acid Derivatives with Nucleophiles A. Reactions of Acid Chlorides with Nucleophiles B. Reactions of Anhydrides with Nucleophiles C. Reactions of Esters with Nucleophiles Reduction of Carboxylic Acid Derivatives
A. Reduction of Esters to Primary Alcohols B. Reduction of Amides to Amines C. Reduction of Nitriles to Primary Amines D. Reduction of Acid Chlorides to Aldehydes E. Relative Reactivities of Carbonyl Compounds
1016 1016 1019 1020 1022 1022 1023 1025 1027 1028 1029 1029 1031 1032 1034 1034 1036 1037 1038
21.9
21.10
Reactions of Carboxylic Acid Derivatives with Organometallic Reagents A. Reaction of Esters with Grignard Reagents B. Reaction of Acid Chlorides with Lithium Dialkylcuprates Synthesis of Carboxylic Acid Derivatives Use and Occurrence of Carboxylic Acids and Their Derivatives A. Nylon and Polyesters B. Waxes, Fats, and Phospholipids Key Ideas in Chapter 21 Additional Problems
21.11 21.12
22
1047
1048 1048 1051 1053 1057 1057 1059 1060 1062 1063 1063 1066 1067 1070
22.2 22.3
22.4
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22.5
Condensation Reactions Involving Ester Enolate Ions A. Claisen Condensation B. Dieckmann Condensation C. Crossed Claisen Condensation D. Synthesis with the Claisen Condensation Biosynthesis of Fatty Acids Alkylation of Ester Enolate Ions A. Malonic Ester Synthesis B. Direct Alkylation of Enolate Ions Derived from Monoesters C. Acetoacetic Ester Synthesis Conjugate-Addition Reactions
A. Conjugate Addition to a,b-Unsaturated Carbonyl Compounds B. Conjugate Addition Reactions versus Carbonyl-Group Reactions C. Conjugate Addition of Enolate Ions
1072 1072 1076 1076 1078 1081 1084 1084 1086 1089 1092 1092 1095 1097 1100 1101 1101 1102 1103 1105 1106
22.6 22.7
22.8
22.9 22.10
Reduction of a,b-Unsaturated Carbonyl Compounds Reactions of a,b-Unsaturated Carbonyl Compounds with Organometallic Reagents A. Addition of Organolithium Reagents to the Carbonyl Group B. Conjugate Addition of Lithium Dialkylcuprate Reagents Organic Synthesis with Conjugate-Addition Reactions Key Ideas in Chapter 22 Additional Problems
22.11
23
1116
1117 1117 1117 1119 1120 1121 1121 1121 1122 1122 1123 1127 1128 1129
23.5
Basicity and Acidity of Amines A. Basicity of Amines B. Substituent Effects on Amine Basicity C. Separations Using Amine Basicity D. Acidity of Amines E. Summary of Acidity and Basicity
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23.6 23.7
Quaternary Ammonium and Phosphonium Salts Alkylation and Acylation Reactions of Amines
A. Direct Alkylation of Amines B. Reductive Amination C. Acylation of Amines
1129 1131 1131 1133 1135 1136 1138 1139 1139 1142 1144 1145 1145 1146 1147 1150 1154 1155 1155 1155 1157 1158
Hofmann Elimination of Quaternary Ammonium Hydroxides Aromatic Substitution Reactions of Aniline Derivatives Diazotization; Reactions of Diazonium Ions A. Formation and Substitution Reactions of Diazonium Salts B. Aromatic Substitution with Diazonium Ions C. Reactions of Secondary and Tertiary Amines with Nitrous Acid Synthesis of Amines
A. Gabriel Synthesis of Primary Amines B. Reduction of Nitro Compounds C. Amination of Aryl Halides and Aryl Triates D. Curtius and Hofmann Rearrangements E. Synthesis of Amines: Summary
23.11
23.12
Use and Occurrence of Amines A. Industrial Use of Amines and Ammonia B. Naturally Occurring Amines Key Ideas in Chapter 23 Additional Problems
24
CARBOHYDRATES
24.1 24.2 24.3 Classication and Properties of Carbohydrates Fischer Projections Structures of the Monosaccharides A. Stereochemistry and Conguration B. Cyclic Structures of the Monosaccharides Mutarotation of Carbohydrates Base-Catalyzed Isomerization of Aldoses and Ketoses Glycosides Ether and Ester Derivatives of Carbohydrates Oxidation and Reduction Reactions of Carbohydrates
A. Oxidation to Aldonic Acids
1166
1167 1168 1173 1173 1178 1183 1186 1188 1191 1193 1194
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24.9 24.10
24.11
Disaccharides and Polysaccharides A. Disaccharides B. Polysaccharides Key Ideas in Chapter 24 Additional Problems
25
1220
1220 1220 1221 1224 1224 1226 1226 1226 1229 1230 1231 1231 1234 1238 1239 1240 1245 1245 1248 1253 1255 1257 1258
25.2
25.3
The Chemistry of Furan, Pyrrole, and Thiophene A. Electrophilic Aromatic Substitution B. Addition Reactions of Furan C. Side-Chain Reactions The Chemistry of Pyridine
A. Electrophilic Aromatic Substitution B. Nucleophilic Aromatic Substitution C. N-Alkylpyridinium Salts and Their Reactions D. Side-Chain Reactions of Pyridine Derivatives E. Pyridinium Ions in Biology: Pyridoxal Phosphate
25.4
25.5
Nucleosides, Nucleotides, and Nucleic Acids A. Nucleosides and Nucleotides B. The Structures of DNA and RNA C. DNA Modication and Chemical Carcinogenesis Other Biologically Important Heterocyclic Compounds Key Ideas in Chapter 25 Additional Problems
25.6
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26
1265
1266 1266 1267 1270 1271 1271 1273 1277 1279 1279 1279 1280 1281 1282 1283 1292 1292 1295 1296 1299 1303 1305 1305 1308 1308 1310 1315 1315 1318 1323 1324
26.2 26.3
Stereochemistry of the a-Amino Acids Acid-Base Properties of Amino Acids and Peptides A. Zwitterionic Structures of Amino Acids and Peptides B. Isoelectric Points of Amino Acids and Peptides C. Separations of Amino Acids and Peptides Using AcidBase Properties Synthesis and Enantiomeric Resolution of a-Amino Acids A. Alkylation of Ammonia B. Alkylation of Aminomalonate Derivatives C. Strecker Synthesis D. Enantiomeric Resolution of a-Amino Acids Acylation and Esterication Reactions of Amino Acids Solid-Phase Peptide Synthesis Hydrolysis of Peptides A. Complete Hydrolysis and Amino Acid Analysis B. Enzyme-Catalyzed Peptide Hydrolysis Primary Structure of Peptides and Proteins A. Peptide Sequencing by Mass Spectrometry B. Peptide Sequencing by the Edman Degradation C. Protein Sequencing D. Posttranslational Modication of Proteins Higher-Order Structures of Proteins
A. Secondary Structure B. Tertiary and Quaternary Structure
26.4
26.8
26.9
26.10
Enzymes: Biological Catalysts A. The Catalytic Action of Enzymes B. Enzymes as Drug Targets: Enzyme Inhibition Key Ideas in Chapter 26 Additional Problems
27
PERICYCLIC REACTIONS
27.1 Molecular Orbitals of Conjugated p-Electron Systems A. Molecular Orbitals of Conjugated Alkenes
1333
1336 1336
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CONTENTS
27.2
Electrocyclic Reactions A. Ground-State (Thermal) Electrocyclic Reactions B. Excited-State (Photochemical) Electrocyclic Reactions C. Selection Rules and Microscopic Reversibility Cycloaddition Reactions Thermal Sigmatropic Reactions A. Classication and Stereochemistry B. Thermal [3,3] Sigmatropic Reactions C. Summary: Selection Rules for Thermal Sigmatropic Reactions Fluxional Molecules Biological Pericyclic Reactions: The Formation of Vitamin D Key Ideas in Chapter 27 Additional Problems
1343 1343 1346 1347 1349 1353 1353 1360 1362 1364 1365 1367 1368
27.3 27.4
27.5 27.6
APPENDICES
Appendix I. Appendix II. Appendix III. Substitutive Nomenclature of Organic Compounds Infrared Absorptions of Organic Compounds Proton NMR Chemical Shifts in Organic Compounds A. Protons within Functional Groups B. Protons Adjacent to Functional Groups
13
A-1
A-1 A-2 A-5 A-5 A-5 A-7 A-7 A-7 A-8 A-8 A-9 A-9 A-9 A-9 A-10 A-10 A-10 A-10 A-10
APPENDIX IV.
A. Chemical Shifts of Carbons within Functional Groups B. Chemical Shifts of Carbons Adjacent to Functional Groups
APPENDIX V.
Summary of Synthetic Methods A. Synthesis of Alkanes and Aromatic Hydrocarbons B. Synthesis of Alkenes C. Synthesis of Alkynes D. Synthesis of Alkyl, Aryl, and Vinylic Halides E. Synthesis of Grignard Reagents and Related Organometallic Compounds F. Synthesis of Alcohols and Phenols G. Synthesis of Glycols H. Synthesis of Ethers, Acetals, and Suldes I. Synthesis of Epoxides J. Synthesis of Disuldes
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K. Synthesis of Aldehydes L. Synthesis of Ketones M.Synthesis of Sulfoxides and Sulfones N. Synthesis of Carboxylic and Sulfonic Acids O. Synthesis of Esters P. Synthesis of Anhydrides Q. Synthesis of Acid Chlorides R. Synthesis of Amides S. Synthesis of Nitriles T. Synthesis of Amines U. Synthesis of Nitro Compounds
A-11 A-11 A-11 A-11 A-12 A-12 A-12 A-12 A-12 A-12 A-13
Reactions Used to Form CarbonCarbon Bonds Typical Acidities and Basicities of Organic Functional Groups
A. Acidities of Groups That Ionize to Give Anionic Conjugate Bases B. Basicities of Groups That Protonate to Give Cationic Conjugate Acids
Credits Index
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Preface
A PREVIEW OF THE FIFTH EDITION
I believe, and research in chemical education shows, that students who make the effort to learn but still have trouble in organic chemistry are in many cases trying to memorize their way through the subject. One of the keys to students success, then, is to provide them with help in relating one part of the subject to the nextto help them see how various reactions that seem very different are tied together by certain fundamentals. An overarching goal of my text is to help students achieve a relational understanding of organic chemistry. Here are some of the ways that I have tried to help students meet this goal.
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The presentation of stereochemistry is another example. The basic idea of stereoisomers is introduced in Chapter 4 (Alkenes). A full chapter on stereochemistry comes two chapters later. Cyclic compounds and the stereochemistry of reactions follow subsequently. Then the ideas of group equivalence and nonequivalence are introduced even later, both in the context of enzyme catalysis and NMR spectroscopy. The approach to organic synthesis is yet another example. I start with simple reactions and then show students how to think about them in reverse. Then, later, I introduce the idea of multistep synthesis using relatively simple two- and three-step sequences. Later still, we have another discussion in which stereochemistry comes into play. Even later, the use of protecting groups is introduced. This tiered presentation of key topics requires some repetition. Although the repetition of key points might be considered inefcient, I believe that it is crucial to the learning process. When a topic is considered after its rst introduction, I have provided detailed cross-referencing to the original material. Students are never cast adrift with terminology that has not been completely dened and reinforced.
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the Heck and Stille reactions, by adding sections on the Suzuki coupling, alkene metathesis, and BuchwaldHartwig amination. Asymmetric epoxidation is also introduced, and a modern approach to understanding the rate accelerations observed for many intramolecular reactions has been developed. There is a somewhat higher level of molecular orbital theory than in previous editions. Accompanied by detailed explanations and illustrations, MO theory is related to practical considerations, such as the meaning of resonance structures, the basis of aromaticity, and the understanding of reaction stereochemistry.
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Explorations. The Study Guide Links, which are called out with margin icons in the text, are additional discussions of certain topics with which, in my experience, many students require additional assistance. Examples are How to Study Organic Reactions, and Solving Structure Problems. The Further Explorations, also called out with margin icons in the text, are short discussions that move beyond the text material. An example is Fourier-Transform NMR. 2. Molecular models (Model 1013) from Maruzen International are available as a bundle with the textbook. For more information and pricing, please contact Ben Roberts: bwr@roberts-publishers.com. 3. We will provide, to adopting instructors, a PDF image of the problem solutions that are not provided in the Study Guide and Solutions Manual (see the discussion of paired problems above), as well as full-color images of all gures in conventional formats so that they can be used in classroom presentations. Instructors at adopting institutions who want this material should request it from the publisher at bwr@roberts-publishers.com. 4. As with the fourth edition, we will maintain, on the World-Wide Web, an up-to-date list of errata in PDF format for both the text and the Study Guide and Solutions Manual supplement. These lists of errors will be generally available to instructors and students alike.
ACKNOWLEDGMENTS
I am indebted to my dean, Craig Svensson, and my department head, Rick Borch, for providing a sabbatical leave in 20072008, as well as a climate in which this edition could be completed successfully. The electronic resources of the Purdue Library have streamlined the research process for this text in a way that was unimaginable 25 years ago, and I would like to thank Emily Mobley, Purdues Dean of Libraries Emerita, for bringing the electronic library to fruition, and Jim Mullins, the present dean, for fostering its continued improvement. Thanks to my faculty and staff colleagues at Purdue and beyondJohn Grutzner, Don Bergstrom, Mark Green, Chris Rochet, Ross Weatherman, Phil Fuchs, Mark Lipton, Ei-ichi Negishi, Markus Lill, David Nichols, Mark Cushman, Arun Ghosh, John Bartmess (University of Tennessee), Bob Hammer (formerly of Louisiana State University), Karl Wood, David Allen, and Susan Holladayfor advice, assistance, and suggestions. Special thanks go to two very special teaching assistants, Lisa Bonner and Animesh Aditya, for their hard work, their advice, and their effective and inspiring teaching. The reviewers named in the list that follows this preface provided invaluable assistance in polishing this text. I am particularly indebted to Prof. David Hansen of Amherst College, Prof. Paul Rablen of Swarthmore College, and Prof. Carolyn Anderson of Calvin College, who provided invaluable suggestions through all or most of the project. Prof. Ahamindra Jain of Harvard University, a dedicated teacher and a delightful collaborator, made some very valuable suggestions in the early going, and I was very much looking forward to working with him as my coauthor on the Study Guide and Solutions
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Manual supplement. Sadly, Ahamindra passed away in 2008, and is sorely missed. I would also like to thank the many students from all over the country who made suggestions, offered comments, and reported errors. I welcome correspondence with the students using this edition. I can be reached by e-mail at marc.loudon.1@purdue.edu. My relationship with the professionals at Side By Side Studios in San Francisco, Mark Ong and Susan Riley, has been particularly gratifying. Not only has their composition work been superb, but also their advice has been invaluable. Side By Side gets ve stars! Working with Ben Roberts at Roberts and Company Publishers has also been a delight, and I hope our association continues far into the future. I very much appreciate the hard work, advice, and attention to detail of the copy editor, John Murdzek, and the proofreader, Gunder Hefta. I would particularly like to thank those acknowledged separately in the Credits section for their willingness to allow me to reproduce their materials. I could not have completed this project without the love and support of Judy and my family, for which I am grateful beyond words. My wish is that the students who use this text will see the amazing diversity and beauty of science through their study of organic chemistry, and that they will benet from using this book as much as I have enjoyed writing it. October 2008 West Lafayette, Indiana Marc Loudon
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Ahamindra Jain, Harvard University Joseph Konopelski, University of California, Santa Cruz Paul LePlae, Wabash College Dewey G. McCafferty, Duke University (and his students) Nasri Nesnas, Florida Institute of Technology Paul R. Rablen, Swarthmore College Christian M. Rojas, Barnard College Barry Snider, Brandeis University Scott A. Snyder, Columbia University Dasan M. Thamattoor, Colby College Lawrence T. Scott, Boston College Scott Ulrich, Ithaca College Richard G. Weiss, Georgetown University Focus Group Participants The following consultants took part in an important focus group at which we discussed the price of textbooks, the trends in student learning, and the value of supplements. Cynthia McGowan, Merrimack College Eriks Rozners, Northeastern University David Hansen, Amherst College Ahamindra Jain, Harvard University Bela Torok, University of Massachusetts, Boston Robert Hanson, Northeastern University
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