Module 2 - Introduction to programming with Java
SYLLABUS:
1.APPLIED BIOINFORMATICS
Introduction:
Introduction to Bioinformatics
Modules
1. Metabolomics with R
2.Introduction to Programming with JAVA
3.Gene Expression informatics and Genotyping
4.Proteomic Bioinformatics
5. Sequence Analysis
6. structural Biology
7.System Biology
8. Building Web based Tools with Perl and MySQL
Projects
Group Project- Bioinformatics Software Development
Research Project
1. Introduction to Bioinformatics
* Introduction to bioinformatics and course introduction
* Overview of public database
* Fundamental Genetics and Biology of Proteins
* Fundamentals of Chemistery
* Revision of Basic Mathametics
*Services: Computing, careers, library
* Hardware networks and internet
*OS software, algorithms and programming
Module 1 - Metabolomics with R
*Introduction to Metabolomics
*Introduction to NMR and GC-MS
*Introduction to R
*Exploratory dataanalysis (PCA, HCA)
*Classification (PLS-DA, SVMs, ANNs)
*Multiway analysis (PARAFAC)
*Legal, Ethical and commercial ramification of
metabolomic bioinformatics.
* Fundamental principles of programming
* Object-oriented programming using Java
* Introduction to databases using MySQL
* Introduction to Softwares engineering processes
Module 3 - Gene expression informatics and genotyping
* Introduction to lab techniques: array CGH, microarrays,
RT- PCR, etc
* Gene Expression databases (GEO, Array Express)
* Principles of multivariate data analysis (PCA, HCA)
* Bioinformatics of Genotyping
* Genepring/Bioconductor workshop
* legal, ethical and commercial ramifications of expressions
bioinformatics
Module 4 - Proteomics bioinformatics
* Introduction to practical proteomics (quantitative and
qualitative)
* Repositories (PRIDE etc)
* Protein/ peptide identification algorithms (Madcot,
X!Tandem, OMMSA)
* Analysis of quantitative proteomic data (iTRAQ, MRM,
etc)
* Biomarker Discovery
Module 5 - Sequence analysis
* Sequence databases (Genbank, Ensemble)
* Sequenceing Technologies and bioinformatics issues
* Sequence comparision (dot plots, BLAST, SW)
* Multiple sequence alignment and visualization
* Advanced algorithms for sequence analysis
* Automating sequence analysis with Perl
Module 6 - Structural biology
* Protein struture predtion and folding
* Structural and Functional domain classification of proteins
* Drug discovery
* Visualisation of molecules
* Simulation of molecular interactions
* Introduction to industry-Standard modelling software
* Legal, ethical and commercial ramifications of structural
bioinformatics
Module 7 - Systems Biology
* Data integration (SBEAMS etc)
* Interaction networks and data
* Cytoscape workshop
* Extraction of netwoksfrom data (EG Bayesian methods)
* Networks dynamics (from classic approaches e.g. ODE and
stochastic algorithems to rule based systems)
* literature mining
* SBML
(*Note: PG diploma in bioinformatics only can select 1st Topic
is compulsory for all the students and any of the 4 modules,
Advanced PG diploma in applied bioinformatics with all the
syllabus along with 1 miniproject)
Course fees:
PG Diploma in Bioinformatics- 3 months- 20000k,
Advanced PG diploma in applied Bioinformatics- 6 Months-
36.250/k
Registration:
FEES: As mentioned in the online registration form.
Advanced registration by paying 1000 Rs from HDFC
bank account transfer to this account number 01241000091380
C.N Prashantha. Arcot Road, Vadapalani Chennai-600026.
(*Demand drafts is not accepting).
i.e., Rs. ………………... for ………. months, per candidate
excluding boarding and lodging charges.
The boarding & lodging has to be arranged by students
themselves. However, guidance and help may be provided on
individual request. Required Online Money transfer to the
account
Contact Us:
www.cbrichennai.com or +91-44 42046770, 9176673779
Prashantha.C.N,
Center for Bioinformatics Research institute