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Article history:
Received 21 September 2009
Received in revised form 6 November 2009
Accepted 9 November 2009
Available online 13 November 2009
Keywords:
Drought tolerance
Conventional breeding
Marker assisted selection
Quantitative trait loci
Transgenic plants
Osmolytes
Hormones
Recombinant inbred lines
a b s t r a c t
Undoubtedly, drought is one of the prime abiotic stresses in the world. Crop yield losses due to drought
stress are considerable. Although a variety of approaches have been used to alleviate the problem of drought,
plant breeding, either conventional breeding or genetic engineering, seems to be an efcient and economic
means of tailoring crops to enable them to grow successfully in drought-prone environments. During the last
century, although plant breeders have made ample progress through conventional breeding in developing
drought tolerant lines/cultivars of some selected crops, the approach is, in fact, highly time-consuming and
labor- and cost-intensive. Alternatively, marker-assisted breeding (MAB) is a more efcient approach, which
identies the usefulness of thousands of genomic regions of a crop under stress conditions, which was, in
reality, previously not possible. Quantitative trait loci (QTL) for drought tolerance have been identied for a
variety of traits in different crops. With the development of comprehensive molecular linkage maps, markerassisted selection procedures have led to pyramiding desirable traits to achieve improvements in crop
drought tolerance. However, the accuracy and preciseness in QTL identication are problematic.
Furthermore, signicant genetic environment interaction, large number of genes encoding yield, and use
of wrong mapping populations, have all harmed programs involved in mapping of QTL for high growth and
yield under water limited conditions. Under such circumstances, a transgenic approach to the problem
seems more convincing and practicable, and it is being pursued vigorously to improve qualitative and
quantitative traits including tolerance to biotic and abiotic stresses in different crops. Rapid advance in
knowledge on genomics and proteomics will certainly be benecial to ne-tune the molecular breeding and
transformation approaches so as to achieve a signicant progress in crop improvement in future. Knowledge
of gene regulation and signal transduction to generate drought tolerant crop cultivars/lines has been
discussed in the present review. In addition, the advantages and disadvantages as well as future prospects of
each breeding approach have also been discussed.
2009 Elsevier Inc. All rights reserved.
Contents
1.
2.
3.
Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Conventional breeding for drought tolerance . . . . . . . . . . . . . . .
Marker-assisted breeding (MAB) for drought tolerance . . . . . . . . . .
3.1.
Identication of QTL associated with drought tolerance . . . . . . .
3.2.
Manipulation of QTL for developing drought tolerant crop cultivars/lines
4.
Engineering crops for enhanced drought toleranceTransgenic approach . . .
5.
Conclusions and future challenges . . . . . . . . . . . . . . . . . . . .
References . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
1. Introduction
Plant breeding, conventional breeding or genetic engineering, is an
art through which crop varieties of high quality and yield are developed.
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169
170
171
171
173
176
180
181
170
breeding, a number of undesired genes are also transferred. Furthermore, to achieve a desired gain through traditional breeding, a number
of selection and breeding cycles may be required. However, improvement in a trait through conventional breeding is not possible if the
appropriate genetic variation in the gene pool of a crop is either very low
or absent. The limited success in improving crop drought tolerance
could be due to the reason that the drought tolerance trait is controlled
by multiple genes having additive effect and a strong interaction exists
between the genes for drought tolerance and those involved in yield
potential. Thus, there is a need to seek more efcient approaches for
genetically tailoring crops for enhanced drought tolerance.
3. Marker-assisted breeding (MAB) for drought tolerance
Through marker-assisted breeding (MAB) it is now possible to
examine the usefulness of thousands of genomic regions of a crop
germplasm under water limited regimes, which was, in fact,
previously not possible. By examining the breeding value of each of
the genomic regions, the breeder can coalesce genes of multifarious
origins in novel ways, which was not possible previously with
conventional breeding tools and protocols (Concept Note).
3.1. Identication of QTL associated with drought tolerance
Like tolerance to other abiotic stresses, that to drought stress is
controlled by many minor genes (polygenes) that have additive
effects in their expression (Zhao, 2002; Mohammadi et al., 2005; Thi
Lang and Chi Buu, 2008). Thus, the loci on chromosomes housing such
types of genes are now referred to as quantitative trait loci (QTL).
Natural genetic variation of a crop can be exploited either via direct
selection under stressful conditions whether simulated or natural or
via mapping of QTL (polygenes) and subsequent marker-assisted
selection (Ashraf et al., 2008). QTL mapping allows to assess the
locations, numbers, magnitude of phenotypic effects, and pattern of
gene action (Vinh and Paterson, 2005). The role of polygenes in
controlling a trait has been widely assessed by traditional means, but
the use of DNA markers and QTL mapping has made it convenient to
dissect the complex traits (Humphreys and Humphreys, 2005). For a
QTL analysis, phenotypic evaluation is carried out of a large number of
plants from a population segregating for a variety of genetic markers;
then a part or the whole population is genotyped; and nally
appropriate statistical analysis is performed to pinpoint the loci
controlling a trait (Asins, 2002). Due to the intricacy of abiotic stress
tolerance and the problems encountered in phenotypic based
selection, the QTL mapping has been considered as imperative to
the use of DNA markers for improving stress tolerance (Ashraf et al.,
2008). Ashraf et al. (2008) have listed a variety of DNA markers such
as RFLPs, RAPDs, CAPS, PCRindels, AFLPs, microsatellites (SSRs), SNPs,
and DNA sequences being currently in use to examine the inheritance
of stress tolerance. QTL mapping for the drought tolerance trait has
been done in different crops, the most notable being maize, wheat,
barley, cotton, sorghum, and rice (Quarrie et al., 1994; Teulat et al.,
1997; Sari-Gorla et al., 1999; Saranga et al., 2001; Sanchez et al., 2002;
Bernier et al., 2008).
In cotton, using F3 families derived from the cross, Gossypium
barbadense cv. F-177 and Gossypium hirsutum cv. Siv'on, Saranga et al.
(2001) identied a subset of 33 QTL under water limited regime, i.e., 11
QTL for plant productivity, 5 for some key physiological traits, and 17 for
ber quality. Recently, using marker-assisted selection, near-isogenic
lines were produced through exchanging QTL for yield and some
drought-related traits between G. barbadense cv. F-177 and G. hirsutum
cv. Siv'on (Levi et al., 2009a,b). For most of the traits studied, the nearisogenic lines showed a marked adaptation to drought, but not for yield.
In particular, the G. barbadense near-isogenic lines showed a steady
photosynthetic efciency under varying water limited regimes.
171
172
Table 1
Drought tolerant cultivars/lines of different crops developed through conventional breeding at different centers/institutions.
Crop
Cultivar/line
How developed
Centers/institutions involved
Reference
ICGV 87354
SEA 5
Common bean
(Phaseolus vulgaris L.)
SEA 13
A 195
Line CO46348
Safower
(Carthamus tinctorius L.
Morlin
Chickpea
(Cicer arietinum L.)
Wheat
(Triticum aestivum L.)
FLIP 87-59C
Willow Creek
Ripper
NE01643
Prairie Red
Jinmai 50
Tall fescue
(Festuca arundinacea)
Nanryo
Soybean
[Glycine max (L.) Merr.]
R01-416F and
R01-581F
Wheatgrass
[Elymus trachycaulus
(Link) Gould ex Shinners]
FirstStrike
Barley
(Hordeum vulgare L.)
Lenetah
Giza 126
Giza 2000
173
Table 1 (continued)
Crop
Cultivar/line
How developed
Centers/institutions involved
Reference
Lignee 686
Giza 126
Bentley
Maize (Zea mays L.)
Oh605
Sixteen tropically
adapted inbred
lines (TZEI 1 to
TZEI 16)
ND2005 and
ND2006
TZE-W Pop DT STR
C4 and TZE-Y Pop
DT STR C4
conditions, but only 4% under stress free conditions. This indicates that this
QTL accounts for variation in grain yield under stressful conditions, but not
for that under non-stress conditions. Its effect was also found to be consistent over years.
In view of a number of previous reports, it is evident that molecular
mapping and a number of QTL associated with drought tolerance
identied in different crops can be effectively used in appropriate
breeding programs meant for improving crop drought tolerance. In a
routine QTL mapping, complex phenotypes are reproduced based on the
available molecular information fundamental to the understanding of
genetic basis of stress tolerance. QTL mapping is thus an effective way of
detecting specic components that permit direct appraisal of stress
tolerance. However, due to the intricacy of genetic system and association
among genetic factors or even between genetic factors and the prevalent
environment, in most cases a limited number of stable QTL than the
expected have been detected across genetic pools and environments.
3.2. Manipulation of QTL for developing drought tolerant crop cultivars/lines
Recent molecular biology tools have undoubtedly led to the
development of DNA markers that have been effectively used to identify
QTL a number of traits in different crops. Furthermore, with the
development of detailed molecular linkage maps, a signicant progress
has been made during the last few years in marker-assisted selection
procedures that have allowed pyramiding of desirable traits to attain
substantial improvements in crop drought tolerance. Of different potential
crops, rice has been the most focused crop for improving its drought
tolerance through MAS. For example, Steele et al. (2006) conducted a
marker-assisted back-crossing (MABC) breeding program to improve
some key root morphological characteristics, involved in the drought
tolerance of an Indian upland elite rice variety, Kalinga III. Cultivar
Azucena, an upland japonica variety originally from the Philippines was
the donor parent. The authors targeted ve fragments on different
chromosomes for introgression, i.e., four contained QTL for improved root
morphological characteristics such as root length and thickness, and the
fth one had a recessive QTL for aroma. The selection carried out in three
backcross (BC) generations and two further crosses between BC3 lines
174
Table 2
Enhancing drought tolerance in different crop lines/varieties using marker-assisted selection.
QTL used
QTL donor
line/cultivar
Recipient line/
cultivar
Line/cultivar developed
Trait improved
Azucena
Kalinga III
Azucena
Kalinga III
Near-isogenic lines
(NILs)
Near-isogenic lines
(NILs)
Azucena
Kalinga III
Way Rarem
Vandana
F3-derived population
qtl12.1
LGA02, Chromosomes 06, 02,
and LGD05
Vandana
Gossypium
barbadense
(GB) cv. F-177
GH cv. Siv'on
F3-derived populations
BC3F3 NILs
Way Rarem
Gossypium
hirsutum (GH)
cv. Siv'on
GB cv. F-177
LGA02
GH cv. Siv'on
GB cv. F-177
NIL 14
Chromosome 25
GB cv. F-177
GH cv. Siv'on
NIL 3-2
PRLT 2/89-33
H-77/833-2
BC4F3-derived NILs
PRLT 2/89-33
PRLT 2/89-33
H77/833-2
H 77/833-2
863B
ICMB 841
F2 population
Topcross pollinators
(TCP) hybrids F4
population
F4 population
Pearl millet
QTL on linkage group 2 (LG 2)
[Pennisetum glaucum (L.) R. Br.]
QTL on LG2
QTL on LG2
Qgydt.icp-2.1 on LG 2
Maize (Zea mays L.)
CML 247
Hordeum
spontaneum
Hordeum
vulgare
BT 642
RT 7000
Sorghum
[Sorghum bicolor (L.) Moench]
BC3F3 NILs
Marker-Assisted Back
Cross (MABC)-derived
BC2F3 hybrids
Back Cross population
Near-Isogenic RT 7000
Reference
During eld trials they retained more green leaf area, delayed
leaf senescence and better grain yield at maturity under
drought stress conditions
Crop
175
176
encode compatible organic osmolytes, plant growth regulators, antioxidants, heat-shock and late embryogenesis abundant proteins, and
transcription factors involved in gene expression.
It is now well established that compatible organic solutes play a
central role in plant drought tolerance (Ashraf and Foolad, 2007).
However, overproduction of compatible organic osmotica is one of the
prominent responses of plants exposed to osmotic stress (Serraj and
Sinclair, 2002; Ashraf et al., 2008) and the genes encoding the synthesis
of such organic solutes can be engineered to overproduce these solutes
in transgenic plants. For example, among the many organic osmolytes
known to play a substantial role in stress tolerance, glycine betaine (GB),
a quaternary ammonium compound, occurs richly in response to
dehydration stress (Mansour, 2000; Mohanty et al., 2002; Yang et al.,
2003; Ashraf and Foolad, 2007). However, for the biosynthesis of GB in
higher plants, choline monooxygenase (CMO) and betaine aldehyde
dehydrogenase (BADH) are two key enzymes. In some independent
studies with different crops, genes encoding these two enzymes have
been engineered (Table 3). For example, transgenic tobacco lines overexpressing CMO have been produced (Shen et al., 2002; Zhang et al.,
2008). These transgenic lines showed higher accumulation of glycine
betaine under water limited conditions and hence enhanced drought
tolerance. Similarly, a potential maize inbred line DH4866 was
transformed with the E. coli betA gene encoding choline dehydrogenase
(Quan et al., 2004). The transformed maize plants contained higher
levels of glycine betaine and showed higher tolerance to drought as
compared to wild-type plants when tested at the initial growth stages.
Like GB, proline is also an important compatible organic osmolyte
that plays a key role in stress tolerance. Pyrroline-5-carboxylate
synthetase (P5CR) is the key enzyme for proline biosynthesis. The
gene for this enzyme has been engineered in soybean (Ronde et al.,
2004), petunia (Yamada et al., 2005), and tobacco (Gubis et al., 2007). All
these transgenic lines showed enhanced accumulation of proline as well
as high drought tolerance (Table 3).
Trehalose, a nonreducing sugar, is also a potential organic osmoticum
which has a substantial role in the protection of plants against stresses.
However, transgenic lines of different crops have been generated using the
genes of some key enzymes involved in trehalose biosynthesis. For
example, enhanced drought tolerance has been achieved by transforming
the gene TPS1 for trehalose-6-phosphate synthase in tobacco (Romero
et al., 1997; Karim et al., 2007). Enhanced drought tolerance has also been
observed in transformed rice plants expressing chimeric gene Ubi1::TPSP
due to increased accumulation of trehalose (Jang et al., 2003). In these
studies and some other reported in the literature, engineering constitutive
over-expression of genes encoding TPS and/or TPP (trehalose-6-phosphate phosphatase) resulted in enhanced trehalose accumulation as well
as drought tolerance. However, the main problem with such transformation had been that it led to abnormal plant development under normal
growth conditions, because the gene transformed remained turned on all
the time. To resolve this problem, Wu and Garg (2003) alternatively
adopted another way to engineer enhanced trehalose accumulation in
such a manner that trehalose biosynthesis took place only when the plant
encountered abiotic stress. They employed a stress-inducible promoter for
the over-expression of E. coli trehalose biosynthesis genes (otsA and otsB)
as fusion gene (TPSP, trehalose-6-phosphate synthase phosphatase) for
developing abiotic stress tolerance in rice. It is pertinent to note here that
the TPSP fusion gene transformation resulted in normal growth under
non-stress conditions, but the expression of the fusion gene occurred only
under stress conditions. In another study, a TPS1TPS2 fusion gene
construct was incorporated into Arabidopsis thaliana through Agrobacterium using either the 35S or the stress regulated rd29A promoter (Miranda
et al., 2007). The lines over-expressing the TPS1TPS2 construct showed
normal growth as well as enhanced tolerance to multiple stresses such as
salinity, drought, freezing, and high temperature. However, in contrast,
the plants over-expressing TPS1 alone under the operation of 35S
promoter exhibited aberrant growth and form. From all these reports, it
is obvious that a substantial improvement in drought tolerance of plants
177
178
Table 3
Improving plant drought tolerance through engineering genes for organic osmolytes, transcription factors, late embryogenesis proteins, and hormones.
Gene engineered
Transgenic host
Source organism
Trait improved
Reference
Escherichia coli
Vigna aconitifolia
Arabidopsis thaliana L.
1-pyrroline-5-carboxylate synthetase
(P5CSF129A) and neomycine
phosphotransferase (nptII)
Triticum aestivum salt tolerance gene (TaSTRG)
Vigna aconitifolia
Escherichia coli
Escherichia coli
Pleurotus sajor-caju
Escherichia coli
Escherichia coli
Saccharomyces cerevisiae
Arabidopsis thaliana L.
Atriplex hortensis
Arabidopsis thaliana L. and
Oryza sativa L.)
Vendruscolo et al.
(2007)
Ronde et al. (2004)
Table 3 (continued)
Gene engineered
Transgenic host
Source organism
Arabidopsis thaliana L.
Arabidopsis thaliana L.
Arabidopsis thaliana L.
Bacillus subtilis
Arabidopsis thaliana L.
Arabidopsis thaliana L.
Escherichia coli
Zea mays L.
Arabidopsis thaliana L.
Arabidopsis thaliana L.
Arabidopsis thaliana
Boea hygrometrica
Arabidopsis thaliana L.
Reference
Zhao et al. (2007)
Bhatnagar-Mathur
et al. (2009)
Oh et al. (2009)
Ye et al. (2001)
Trait improved
both under drought and non-drought conditions
Transgenic plants showed increased resistance to drought and
had high proline accumulation
Enhanced activities of superoxide dismutase, ascorbate peroxidase,
and glutathione reductase
and enhanced proline level in the transgenic plants, while a dramatic
increase in the lipid
peroxidation was observed in the untransformed controls under water
limited conditions
Transgenic lines were hypersensitive to ABA in germination assays, more
susceptible to ABA-elicited inhibition of root elongation, and more sensitive to
ABA-induced stomatal
closure. The transcript levels of ABA biosynthesis, signaling and responsive
genes were generally higher in the seedlings of transgenic plants
than those in wild types
Improved grain lling rate and grain yield (1657%) and drought tolerance
of transgenic plants
Transgenic plants had a lower level of total fructose, unchanged
sucrose levels, and a
slight reduction in hexose levels. However, growth of the levan-accumulating
sacB-transgenic
plants was decreased with the onset of the reproductive phase
Transgenic plants exhibited abnormal leaf morphology; showed variable
twisting and bending along the edges, resulting in a severely wrinkled
leaf shape resulting into a
marked improvement in tolerance to severe water decit conditions
The transgenic plants showed better cellular membrane stability (CMS),
photosynthetic yield, less photo-oxidative damage and better water use
efciency under drought stress
Higher leaf relative water content, less reduction in plant growth,
better cell membrane protection and drought tolerance
AREB1 regulated novel ABRE-dependent
ABA signaling that enhanced drought tolerance in vegetative tissues
Transgenic plants showed increased intrinsic water use efciency accompanied
by a dry weight increase under drought conditions
Lower lipid peroxidation, electrolyte leakage and H2O2 content,
while higher chlorophyll and tocopherol contents in
transgenic plants as compared to wild type
Improved seed germination, plant growth, osmotic adjustment, and activities
of superoxide dismutase and ascorbate peroxidase
Reduced membrane peroxidation and production of malondialdehyde,
while enhanced activity of superoxide dismutase in transgenic rice plants.
RACK1 negatively regulated the redox system-related tolerance to drought stress
Enhanced net photosynthetic rate, 3.8-fold higher level of
APX activity, while reduced toxicity of H2O2 in transgenic plants
Reduced electrolyte leakage, injury, oxidative damage, while improved
photosynthetic rate,
SOD activity and drought tolerance
The relative water content of leaves and activities of photosystem II,
superoxide dismutase
and peroxidase increased, while membrane permeability decreased in
transgenic plants
Da-hong et al.
(2009)
Badawi et al. (2004)
Wang et al. (2005)
179
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