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doi: 10.1111/j.1471-4159.2009.06383.x
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*Department of Neurology and Laboratory of Neuroscience, Dino Ferrari Center, Universita` degli Studi di Milano IRCCS Istituto
Auxologico Italiano, Milan, Italy
Department of Cell Biology, Emory University School of Medicine, Atlanta, Georgia, USA
Neuromuscular Diseases Unit/ALS Clinic, Kantonsspital St. Gallen, St.Gallen, Switzerland
Institute of Pathology, Kantonsspital St. Gallen, St.Gallen, Switzerland
International Centre for Genetic Engineering and Biotechnology (ICGEB), AREA Science Park, Trieste, Italy
Abstract
Transactive response DNA-binding protein 43 (TDP-43) forms
abnormal ubiquitinated and phosphorylated inclusions in brain
tissues from patients with amyotrophic lateral sclerosis (ALS)
and frontotemporal lobar degeneration. TDP-43 is a DNA/
RNA-binding protein involved in RNA processing, such as
transcription, pre-mRNA splicing, mRNA stabilization and
transport to dendrites. We found that in response to oxidative
stress and to environmental insults of different types TDP-43
is capable to assemble into stress granules (SGs), ribonucleoprotein complexes where protein synthesis is temporarily
arrested. We demonstrated that a specific aminoacidic interval
(216315) in the C-terminal region and the RNA-recognition
motif 1 domain are both implicated in TDP-43 participation in
SGs as their deletion prevented the recruitment of TDP-43
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inclusions have been identied also in Alzheimers, Parkinsons and Huntingtons diseases, suggesting it may be a
common marker for many neurodegenerative disorders (Amador-Ortiz et al. 2007; Nakashima-Yasuda et al. 2007;
Schwab et al. 2008). The fact that TDP-43 protein may be
primarily and specically involved in ALS onset has recently
emerged from genetic studies showing TARDBP gene mutations in familial and sporadic ALS cases (Sreedharan et al.
2008; Corrado et al. 2009). Whether TDP-43 protein aggregation is a pathogenic event that triggers neuronal degeneration or whether TDP-43-positive inclusions are the
consequence of a neuroprotective mechanism still remains
an issue to be addressed.
In condition of oxidative stress the regulation of gene
expression at post-transcriptional level, mediated by RBPs, is
known to be impaired. In particular, when a sub-lethal
oxidative stress is induced in vitro, there is an immediate
block of the translation machinery with sequestration of the
actively-translating mRNAs and distinct RBPs to cytoplasmic foci, called stress granules (SGs) (Anderson and
Kedersha 2008). SGs represent a protective mechanism to
bypass the cellular insult as the majority of mRNAs is
silenced in these macromolecular structures in stalled 48S
ribosomal complexes, while only specic and essential
transcripts (i.e. Hsp70) are maintained in active translation
(Anderson and Kedersha 2002; Kedersha and Anderson
2002). During stress, SGs are in dynamic equilibrium
between polysomes and processing bodies (P-bodies), the
latter being constitutive RNP complexes where both mRNA
degradation and microRNA-mediated translational arrest
take place (Kedersha et al. 2005, 2008). It is experimentally
proven that once the insult is removed, these RNP complexes
soon disaggregate in favour of a parallel polysome reassembly and mRNA translation re-initiation. The molecular
mechanisms and the signalling pathways triggering SG
formation have been characterized, as well as the nature of
distinct cellular insults which can induce these structures,
including oxidative stress, proteasome inhibition, osmotic
and heat shocks (Kedersha and Anderson 2007).
In addition to mRNA, several RBPs have been described so
far to be components of these cytoplasmic foci in condition of
cellular insult. T cell-induced antigen 1 (TIA-1) and TIAR
(TIA-related) are the essential RBPs which promote SG
assembly because of their prion-like domains that favour
aggregation of other RBPs/proteins in granules together with
their target mRNAs. SGs also contain PolyA-Binding Protein
1 (PABP-1), the Embryonic Lethal Abnormal Vision (ELAV)
family member Hu R antigen (HuR), Survival Motor Neuron
(SMN), Ras-GAP SH3 domain-binding protein (G3BP),
Staufen, and Fragile X Mental Retardation Protein (FMRP)
RBPs, together with the ribosomal 48S pre-initiation complex, early translation initiation factors, microRNA-associated
Argonaute proteins, p54/Rck helicase, XRN1 exonuclease
and cytoskeletal proteins (Anderson and Kedersha 2008).
Experimental procedures
Cell culture and treatments
The motoneuronal cell line NSC34 (a kind gift of N.R. Cashman,
University of British Columbia, Vancouver, Canada) was cultured as
previously reported (Ratti et al. 2008). NSC34 cells were exposed to
0.5 mM sodium arsenite for 30 min or pre-treated with emetine
(20 lg/mL for 2 h) or puromycin (20 lg/mL for 4 h) as described
(Kedersha and Anderson 2007). MG132 (10 lM) was used for 4 h
as reported (Mazroui et al. 2007). All reagents were purchased from
Sigma (Milan, Italy). For heat shock experiments, cells were
incubated at 44C for 30 min overlaid with mineral oil.
Immunocytochemistry
Cells were xed with 4% paraformaldehyde in phosphate buffered
saline for 15 min, permeabilized with cold methanol and 0.2% Triton
X-100, and blocked with 10% normal goat serum solution (Vector
Laboratories, Burlingame, CA, USA). Incubation with primary
antibodies (TDP-43, 1 : 500, ProteinTech Group, Manchester, UK;
TIAR, 1 : 100, BD Transduction Laboratories, Milan, Italy; HuR,
1 : 500, Molecular Probes, Milan, Italy; Nova1, 1 : 200, Upstate
Biotechnology, Milan, Italy; FLAG, 1 : 1200, Sigma) was performed
in blocking solution for 1 h at 37C. The uorescent-tagged
secondary antibodies Alexa Fluor 488 and 555 (1 : 500, Invitrogen,
Milan, Italy) were used for detection and nuclei were visualized by
4-6-diamidino-2-phenylindole (DAPI) staining (Roche, Milan,
Italy). As a negative control, primary antibodies were replaced by
normal goat serum. Slides were mounted with Fluorsave (Calbiochem, La Jolla, CA, USA) and acquired with a wideeld microscope
(DMIRE2/HCS, Leica Microsystems, Wetzlar, Germany).
Protein extraction, immunoprecipitation and western blotting
NSC34 cells were homogenized in lysis buffer (150 mM NaCl,
20 mM Tris-HCl pH7.4, 1% Triton X-100, protease inhibitor
cocktail), centrifuged at 12 000 g for 15 min at 4C and supernatants were collected. Proteins from cytoplasmic and nuclear
fractions were obtained with the ProteoJETTM kit (Fermentas,
Milan, Italy) following the manufacturers instructions. For immunoprecipitation experiments, 30 lL protein G Sepharose-beads precoated for 6 h with 1.5 lg of the selected antibody were incubated
with 300 lg cytoplasmic protein lysate in NT2 buffer [50 mM TrisHCl pH7.4, 15 mM NaCl, 1 mM MgCl2, 0.05% NP-40 (Sigma)],
containing 400 U RNase inhibitor, 1 mM dithiothreitol and 20 mM
EDTA. After overnight incubation and four washes in NT2 buffer,
recovered proteins were resolved on 10% sodium dodecyl sulfate
polyacrylamide gel electrophoresis and transferred to nitrocellulose
membrane. Western blot and immunoprecipitation assays were
performed with HuR, TIAR, TIA-1 and a-tubulin (all from Santa
Cruz Biotechnology, Santa Cruz, CA, USA), TDP-43 and p84
(Abcam, Cambridge, UK) antibodies.
Results
TDP-43 forms stress granules after arsenite treatment
We investigated whether TDP-43, like other RBPs, is able to
assemble into SGs in condition of oxidative stress by treating
the immortalized motoneuron-like NSC34 cells with 0.5 mM
arsenite for 30 min as previously described (Kedersha and
Anderson 2007). As SG markers in immunouorescence
assays we used antibodies against TIAR, which in physiological conditions shows both a nuclear and cytosolic
distribution (Fig. 1a), and HuR which is predominantly
nuclear, like TDP-43 (Fig. 1b). After arsenite treatment we
observed the formation of cytoplasmic foci which stained
positive for TIAR (80% of cells) and HuR (60% of cells). A
sub-group of cells with TIAR or HuR-positive SGs (30% and
50%, respectively) showed co-localization also with TDP-43
protein in cytoplasmic granules (Fig. 1a and b). To further
demonstrate that TDP-43-positive foci were SGs, we incubated NSC34 cells with arsenite in the presence of two
distinct pharmacological inhibitors of translation, emetine
and puromycin, known to prevent or favour SG formation,
respectively (Kedersha and Anderson 2007). Induction of
oxidative stress in the presence of emetine was not able to
trigger SG assembly (Fig. 1c), whilst with puromycin
We also investigated whether TDP-43 was present in Pbodies, constitutive cytoplasmic RNP complexes which
control mRNA fate and degradation. NSC34 cells were
transiently co-transfected with a Green Fluorescent Protein
(GFP)-tagged plasmid encoding for the P-bodies marker
Dcp1 (Decapping enzyme 1) and a FLAG-tagged TDP-43
construct. Recombinant TDP-43 protein did not show colocalization with Dcp1 both before and after arsenite
treatment, being TDP-43 mainly nuclear in unstressed condition and being present in distinct cytoplasmic punctate
granules after induction of oxidative stress (Fig. 4b).
Both RRM1 domain and C-terminal region are necessary
for TDP-43 aggregation in SGs
We used distinct deletion constructs to identify the aminoacidic regions responsible for TDP-43 assembly into SGs in
condition of oxidative stress (Fig. 5a).
The mutant DRRM1 protein, lacking the entire RRM1
domain responsible for target RNA binding, distributed in
Discussion
In this paper, we proved that TDP-43 is capable to respond to
an environmental insult by assembling into stress granules
(SGs), cytoplasmic ribonucleoprotein foci which sequester
mRNAs, several RBPs and stalled translation initiation
Fig. 5 The RRM1 domain and the C-terminal 216315 aminoacidic region are both
required for TDP-43 targeting to SGs. (a) A
schematic representation of TDP-43 constructs is shown. FLAG-tagged deleted
(DRRM1, 1315 and DC) plasmids were
used for transient transfection of NSC34
cells. (bd) Immunofluorescence images of
transfected NSC34 cells expressing the
different recombinant TDP-43 proteins in
physiological and oxidative (Ars) conditions.
TIAR (green) and FLAG (red) antibodies
were used for detecting SGs and transfected cells, respectively. TIAR and FLAG
co-localization signals are shown (merge),
while nuclei are stained in blue (DAPI).
Scale bar, 10 lm.
Fig. 6 TDP-43 is not necessary for SG formation. Double immunofluorescence staining of NSC34 cells knocked-down for TDP-43
(siTDP-43) and, as a control, for firefly luciferase (siCtrl) after treatment with 0.5 mM arsenite for 30 min. TIAR (green) and TDP-43 (red)
antibodies were used. Arrows indicate TDP-43-depleted cells. Merged
images are shown and nuclei visualized by DAPI staining (blue). Scale
bar, 10 lm.
(a)
(b)
(c)
(c)
(green) and HuR (red) proteins in the nucleus and a minor localization
in discrete granules in the cytoplasm with no evident co-localization
signals (merge and inset images). (d) Immunofluorescence image of
an affected motor neuron where TDP-43 (green) was completely
mislocalized in the cytoplasm in a granule-like distribution, without
forming inclusions. TIAR staining (red) does not overlap TDP-43 signals (merge and inset images). The asterisk (*) indicates lipofuscin
granules. Scale bar, 20 lm.
Acknowledgements
We thank prof. F.E. Baralle for critically reading the manuscript, E.
Giovannini for her technical help and G. Bassell. This work was
nancially supported by the Italian Ministry of Health (Malattie
Neurodegenerative, ex Art.56, n.533F/N1), Fondazione Cariplo
(Grant n.2008.2307) and a donation of Peviani Family. EB is
supported by Telethon and Eurasnet.
Supporting information
Additional Supporting Information may be found in the online
version of this article:
Figure S1. TDP-43 is recruited to SGs in response to different
environmental insults.
Figure S2. TDP-43 does not promote SG formation.
Figure S3. TDP-43 gene silencing in NSC34 cells.
Figure S4. Depletion of TDP-43 does not impair cell viability
following oxidative stress.
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