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Manja Wolter
1
Claudia Rower
Cornelia Koy1
Toralf Reimer2
Werner Rath3
Ulrich Pecks3
Michael O. Glocker1
1 Proteome
Center Rostock,
Medical Faculty and Natural
Science Faculty, University of
Rostock, Rostock, Germany
2 Department of Obstetrics and
Gynecology, Medical Faculty,
University of Rostock, Clinic
Suedstadt, Rostock, Germany
3 Department of Obstetrics and
Gynecology, Medical Faculty,
RWTH Aachen University,
Germany
Research Article
1 Introduction
Correspondence: Dr. Michael O. Glocker, Proteome Center Rostock, University of Rostock, Schillingallee 69, D-18057 Rostock,
Germany
E-mail: michael.glocker@med.uni-rostock.de
Fax: +49-381-494-4932
Abbreviations: AUC, area under curve; CHCA, alphacyano-4-hydroxy cinnamic acid; CTRL, control; DHB, 2,5dihydroxybenzoic acid; HDL, high-density lipoproteins; IUGR,
intrauterine growth restriction; [M+H]+ , protonated molecular ion; MRM, multi-reaction monitoring; m/z, mass to charge
ratio; n-OGP, n-octylglucopyranoside; ROC, receiver operator
characteristics; SGA, small for gestational age; TIC, total ion
count; VLDL, very low-density lipoproteins
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in order to detect proteins related to atherosclerosis in umbilical cord blood, as identifying those proteins could help
developing a targeted therapy for prevention.
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target plate. The matrix solution contained 5 mg/mL 2,5dihydroxybenzoic acid (DHB) which were dissolved in 1 mL
of solvent that consisted of 50% ACN and 50% of a 0.1%
TFA solution (v/v). MS/MS spectra were recorded on an Axima MALDI QIT ToF mass spectrometer (Shimadzu Biotech,
Manchester, UK) utilizing a nitrogen pulsed laser (337 nm,
35 ns pulse length) and employing a three-dimensional
ion trap supplied by helium (pulsed flow gas) for collisional cooling and argon (collisional gas) for collisionally
induced dissociation (CID) [33, 34]. Precursor ions were excited with off-resonance sinusoidal waveforms whereas at
the same time argon was allowed to enter the trap. For
fragmentation, the width of the precursor ion selection window was dependent on the mass of the precursor ion and
C 2012 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim
varied between 2 and 10 Da. Spectra were externally calibrated with a manually mixed peptide standard consisting
of bradykinin (17), [M+H]+ 757.39; angiotensin II, [M+H]+
1046.53; angiotensin I, [M+H]+ 1296.68; bombesin, [M+H]+
1619.81; N-acetyl renin substrate, [M+H]+ 1800.93; ACTH
(117), [M+H]+ 2093.08; ACTH (1839), [M+H]+ 2465.19;
somatostatin, [M+H]+ 3147.46; insulin (oxidized beta chain),
[M+H]+ 3494.64; as well as internally recalibrated using
known ion signals of the MS/MS spectrum. Further processing and analysis of the MS/MS spectra was performed with
the LaunchpadTM software, version 2.8.4 (Shimadzu Biotech).
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Figure 4. Hierarchical clustering analysis with quotient values derived from protein ion signal intensities. Duplicate measurements
from control samples are clearly sorted to the CTRL group (left)
and IUGR samples to the IUGR group (right), except for control
samples 14 (one sample) and 15 (both samples) that are allocated
to the IUGR group, and IUGR samples 16 (both samples), 17 (one
sample), and 18 (one sample) that are grouped to the controls.
Quotients AF from top to bottom as in Fig. 3 (indicated at the
right). Patient numbering as in Supporting Information Table S1.
3 Results
3.1 Clinical characteristics of patients and donors
Clinical parameters by which the study group (IUGR) and the
control group (CTRL) could be characterized include both, information about the fetus/infant and the mothers. Important
facts on the mothers are maternal age (IUGR: 30.4 years
(95% CI 26.934.0), CTRL: 31.7 years (95% CI 28.333.9)),
maternal BMI (IUGR: 24.2 (95% CI 22.426.1), CTRL: 23.7
(95% CI 20.826.6)), primipariety (IUGR: 80%, CTRL 27%),
and smoking status of the mother (currently smoking IUGR:
27%, CTRL 20%). The mean week of gestation at delivery
was 33.0 wk (95% CI 30.535.5) for the IUGR group, and
32.8 wk (95% CI 30.235.3) for the CTRL group (Supporting
Information Table S1). Mean fetal weight was 1383 g (95%
CI 10051761) in IUGR and 2129 g (95% CI 15842673)
for CTRL. By definition, IUGR fetuses were born with birth
weight below the 10th percentile (IUGR: mean 4.0 (95% CI
2.55.5), CTRL: 50.7 (95% CI 40.860.5)).
Blood samples were taken postnatally from the umbilical
cord vein and serum was prepared and divided into aliquots
according to standardized protocols. Altogether, time between blood sample collection and storage of serum aliquots
averaged below 1 h.
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Entrya)
1
2
3
4
5
6
7
8
m/z
8205
8766
13945
15129
15308
16001
9422
13883
PTTAb)
0.0000155
0.000138
0.000138
0.0000331
0.0000155
0.00321
0.00105
0.00364
PWKWb)
<0.000001
0.0000188
0.0000775
<0.000001
<0.000001
0.00000437
0.00122
0.000191
PADb)
0.00000845
0.534
0.95
<0.000001
<0.000001
<0.000001
0.18
0.183
DAvec)
201.55
28.06
29.13
830.61
233.72
611.11
244.12
33.6
IUGR
368.66/168.80
48.58/14.17
74.94/20.14
597.34/264.16
165.12/64.22
394.64/242.18
721.47/249.24
98.64/29.63
167.11/61.73
76.64/28.70
45.81/27.34
1427.95/759.19
398.84/199.50
1005.74/895.92
477.34/237.46
65.05/44.79
a) Entries 16: best differentiating ion signals according to peak statistics; entries 7, 8: most robust ion signals according to peak areas.
b) PTTA, p value from combined paired Students t-test and ANOVA test; PWKW, p value from combined Wilcoxon rank-sum test and
KruskalWallis test; PAD, p value from AndersonDarling test.
c) DAve, difference between the maximal and the minimal average peak area/intensity of all classes.
C 2012 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim
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Measurement True
False
True
False
Sensitivity Specificity False
False
Positive
Negative
ROC
positive positive negative negative
positive rate negative rate predictive value predictive value AUC c)
MS 1+2a)
MS 3+4b)
28
26
1
2
29
28
2
4
0.93
0.87
0.97
0.93
0.03
0.07
0.07
0.13
0.97
0.93
0.94
0.88
0.99
0.91
a) Values from the first measurement series (MS1 and MS2) of the first sample work-up.
b) Values from the second measurement series (MS3 and MS4) of the second sample work-up.
c) ROC, receiver operator characteristics; AUC, area under curve.
both were controls according to clinical data (cf. Supporting Information Table S1). Interestingly, the IUGR group
seemed much more homogenous except for samples 29 and
30 (at the very right in Fig. 4). These samples obviously contained too much hemoglobin as judged by their reddish color,
presumably because of artifactual disruption of red blood cells
during serum preparation. Therefore, these two samples were
excluded from subsequent subgroup analyses. As indicated,
the control group seemed more heterogeneous, consisting
of three major groups. Higher heterogeneities in the control
groups were also observed in earlier studies [17] and is attributed to the fact that in general clinical inclusion criteria
are well defined for the disease under study but less well
defined for controls (absence of disease).
Figure 6. MALDI-QIT-TOF MSn sequencing result after fragmentation of peptide ion signal at m/z 1196.61 Determined partial
amino acid sequences are depicted and were assigned to the
apolipoprotein C-III-derived peptide comprising amino acids 41
51. Amino acid residues are depicted in single letter code. The
mass spectrometric fragment ions from the B-type ion series, the
Y ion series, as well as typical losses of water (* ) are indicated.
#, not identified. DHB was used as matrix.
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Table 3. Subgroup analysis of differentiating ion signal intensities from cord blood samples with respect to gestational age
8205
8766
13 883
13 945
15 129
15 308
16 001
Differencesb)
CTRL
IUGR
CTRL
IUGR
<34 weeks
>34 weeks
311.68
48.18
93.49
70.20
668.38
182.45
470.12
161.62
77.82
74.28
54.04
1204.74
350.01
707.27
454.14
49.16
106.38
82.05
490.78
139.11
281.41
175.36
74.87
51.19
47.65
1326.81
369.48
397.74
+150.06
29.64
+19.21
+16.16
536.36
167.56
237.15
+278.78
25.71
+55.19
+34.40
836.03
230.37
116.33
a) Mean values of ion signal intensities from measurement series MS1 and MS2 (cf. Supporting Information Table 2).
b) CTRL value minus IUGR value.
Table 4. Identified proteins in SDS-PAGE analysis after fractionated precipitation of serum proteins from cord blood
Band
numbera)
Accession
numberb)
Protein name
Scorec)
RMS
[ppm]d)
Matchede)
Coverage
[%]f)
Molecular
mass [Da]g)
1
2
3
4
5
P02765
P06727
P02766
P02647
P69891
P69892
O95445
P02753
P02652
P02766
P69891
P69892
P02656
Alpha-2-HS-glycoprotein
Apolipoprotein A-IV
Transthyretin
Apolipoprotein A-I
Hemoglobin subunit gamma-1
Hemoglobin subunit gamma-2
Apolipoprotein M
Retinol-binding protein 4
Apolipoprotein A-II
Transthyretin
Hemoglobin subunit gamma-1
Hemoglobin subunit gamma-2
Apolipoprotein C-III h)
93
377
92
246
172
172
158
127
100
197
158
158
48
37
26
53
17
29
29
34
23
24
34
19
19
25
8
30
5
23
11
11
11
11
6
9
10
10
4
22
62
55
64
74
74
35
68
64
69
74
74
51
40 098
45 371
15 991
30 759
16 187
16 173
21 582
23 337
11 282
15 991
16 187
16 173
10 845
6
7
8
9
10
11
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4 Discussion
We recently reported on affinity-based, multiparametric
MALDI-TOF MS analysis of blood serum samples as an overall robust and valid method for both, biomarker discovery,
and for diagnostic purposes in pregnancy-related disorders
[17, 18]. We now adapted this method for the analysis of um
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Table 5. Total apolipoprotein C-III concentrations and relative amounts of sialylated species in cord blood samples
Patient
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
Apo C-III
[g/mL]a)
54.68
69.49
33.21
16.96
21.94
43.33
26.55
15.46
22.04
25.05
22.44
27.43
18.79
35.98
15.17
15.94
26.01
10.11
25.93
12.99
24.74
18.98
46.64
14.96
26.87
10.32
34.43
20.93
34.11
15.12
Standard
deviation
0.060
0.018
0.042
0.028
0.004
0.032
0.043
0.013
0.006
0.015
0.016
0.014
0.016
0.025
0.023
0.005
0.029
0.000
0.003
0.011
0.018
0.004
0.016
0.008
0.015
0.001
0.021
0.018
0.045
0.006
Apo C-III0
[%]b)
Apo C-III0
[%]b)
Apo C-III1
[%]b)
Apo C-III2
[%]b)
MS 1
MS 2
MS 1
MS 2
MS 1
MS 2
MS 1
MS 2
4
4
4
5
2
2
3
5
2
5
7
6
4
2
8
9
7
9
5
9
9
8
7
10
11
11
6
9
10
21
3
3
3
4
3
2
4
8
2
5
8
5
4
2
9
8
9
8
7
8
9
7
6
9
15
10
5
11
9
18
5
5
5
5
6
6
8
8
10
7
8
5
6
4
6
8
6
4
6
4
3
5
6
5
5
10
4
5
11
7
5
6
5
5
5
7
7
7
10
8
8
5
6
4
8
7
5
5
7
4
4
5
6
5
6
11
4
6
11
9
49
56
60
64
55
60
56
58
57
58
53
56
58
57
57
49
58
43
60
50
44
46
65
48
55
55
50
50
67
43
49
57
60
61
54
59
56
58
57
55
56
59
56
54
56
50
56
40
58
49
44
46
63
47
49
53
50
50
68
49
42
35
31
26
37
32
33
29
31
30
32
33
32
37
29
34
29
44
29
37
44
41
22
37
29
24
40
36
12
29
43
34
32
30
38
32
33
27
31
32
28
31
34
40
27
35
30
47
28
39
43
42
25
39
30
26
41
33
12
24
a) ELISA determinations.
b) Relative peak areas of ion signals at m/z 8766 (Apo C-III0 ), m/z 9134 (Apo C-III0 ), m/z 9422 (Apo C-III1 ), and m/z 9713 (Apo C-III2 ),
respectively.
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