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PERSPECTIVE
Multipolar electrostatics
Cite this: Phys. Chem. Chem. Phys.,
2014, 16, 10367
computationally prohibitive compared to simulation using point-charges. Whilst the second of these may
DOI: 10.1039/c3cp54829e
grounding. In the current work, we disprove the two statements above and systematically demonstrate that
have found some basis when computational power was a limiting factor, the first has no theoretical
multipole moments are not discredited by either. We hope that this perspective will help in catalysing the
www.rsc.org/pccp
transition to more realistic electrostatic modelling, to be adopted by popular molecular simulation software.
1. Introduction
Atomistic simulations of large systems over long time scales
can only be achieved by using energy potentials, rather than by
dinger equation on-the-fly. The question is
solving the Schro
a
Salvatore Cardamone
Timothy J. Hughes
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electrostatic potential as being generated by an atomic pointcharge. This means that a single number (the point-charge) is
associated with the atoms nucleus while assuming that this
number summarises the complexity of the atomic electron
density sufficiently well in order to predict its electrostatic
interaction behaviour.
A simple example shows that this view cannot be right. In
Fig. 1 we consider the global energy minimum of the water
dimer.1 This case serves to illustrate an essential argument that
also applies to hydrogen bonding in general, pp stacking and
halogen bonding, which will be discussed in detail much later.
A typical ab initio calculation on the water dimer will produce
a flap angle a of about 451, while a point-charge model
(i.e. single charge for each atom) will generate an a angle about
251. Disregarding the irrelevant details of the level of theory
used or the exact nature of this point charge-model,2 it is clear
that the latter cannot predict the required tilt in the water
molecule at the right hand side. Only when extra off-nuclear
point-charges are added to oxygen does the geometry prediction
improve. Equally, if point multipole moments are added to
the oxygen then the prediction improves substantially. This
example shows that the currently ubiquitous treatment of
electrostatic interaction cannot be correct. This simply case
study is relevant because it is generally acknowledged that
Paul L. A. Popelier
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Perspective
2. Accuracy
2.1
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Non-polar systems
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Perspective
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Fig. 5
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The structures used in the first four blind tests on crystal structure prediction (CSP). Source: Int. Rev. Phys. Chem., 2008, 27, 541.
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Fig. 6
Perspective
The six structures used in the CSP2010 blind test. [Source: Acta Crystallogr., Sect. B: Struct. Sci., 2011, 67, 535.]
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Point charge
CSP1999
Number of methods
I
II
III
VII
6
4
1
1
0
Multipole
Other
2
0
0
0
1
3
0
0
0
0
CSP2001
Number of methods
IV
V
VI
11
1(8)
3(5)
0(4)
3
1(0)
1(1)
0(0)
5
0(0)
0(1)
0(0)
CSP2004
Number of methods
VIII
IX
X
XI
11
1(4)
0(5)
0(4)
0(0)
3
2(2)
1(1)
0(2)
0(2)
4
1(1)
0(2)
0(1)
0(1)
CSP2007
Number of methods
XII
XIII
XIV
XV
5
0(2)
0(2)
0(1)
0(0)
4
1(2)
3(1)
2(1)
1(1)
5
3(0)
1(0)
1(0)
1(0)
CSP2010
Number of methods
XVI
XVII
XVIII
XIX
XX
XXI (i)
XXI (ii)
XXI (iii)
XXI (iv)
5
0(2)
0(2)
0(3)
1(2)
0(0)
0(0)
0(1)
0(2)
0(1)
3
1(2)
1(2)
0(0)
0(1)
2(0)
0(3)
2(1)
0(3)
0(3)
6
1(0)
1(0)
1(0)
1(0)
0(1)
0(1)
0(1)
0(1)
0(1)
3. Computational eciency of
multipolar electrostatics
3.1
Transferability
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Perspective
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Simulation
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We wish to raise the issue of the conformational dependence of electronic properties. In reality, this problem is not
unique to higher order multipole moments. Conventional force
fields, which employ partial charges, choose to reside in a
pseudo-reality of an invariable electrostatic representation, and so
rarely encounter conformational dependencies. It is rather more
dicult to simply ignore the obvious reality of molecules as flexible
entities when using multipole moments, and has been emphasised
in analyses using both DMA and CAMM algorithms.161,162 Use of
the electrostatic properties for one conformation correctly reproduces its corresponding electrostatic potential. However, use of
this parameterisation in an alternative conformation results in
highly unfavourable energies. It should be noted that this insuciency is equally prominent when using a conserved set of partial
charges between conformers. As such, since the issue of flexible
molecules is a computational complexity that pervades all electrostatic approximations, it would be unfair to regard this as an
additional burden specifically for multipole moments. Instead, it
is a hurdle that both techniques are required to overcome in
enhancing the accuracy of simulation.
Evaluating multipole moments as a function of a conformational parameter is appealing. For example, the multipole
moments for both atoms in CO may be described analytically as
a function of the interatomic distance in the molecule.163 However, scaling this idea up to systems with far more conformational
degrees of freedom, such as an amino acid, is an appreciably
more dicult task. An analytical compromise has been
proposed in the past,164 whereby the multipole moments of an
atom in ethanol, glycine and acrolein are represented by a Fourier
series truncated at third order, whose free variables correspond to
the dihedral angles of the molecule.
Instead of analytical methods, machine learning methods
can be used to interpolate between a set of multipole moments
defined for dierent molecular conformations.146 As such,
one may then predict the multipole moments of an arbitrary
conformation that is not present within the initial training
set, which corresponds to a true external validation. Fig. 7
demonstrates the errors for (double peptide-capped) histidine
obtained in following such a scheme.
Alternative methods have been developed but the literature
on these techniques appears to be relatively sparse. For example,
it has been proposed165 that one may average the atomic multipole moments over all conformers that are sampled during a
simulation. This has been done for alanine and glycine by
shifting the higher order (l = 1) atomic multipole moment
expansions to a smaller number of expansion sites distributed
throughout the molecule. An additional method, previously
tested for energy minimisations of crystal structures, revolves
around periodically recalculating the atomic multipole moments
for the molecule.166 This proved to give substantially better
results than the implementation of then-current methodologies,
particularly for systems whose structures are dictated by strong
hydrogen bonding.
Forces (and torques) must be calculated for the molecular
translational and rotational degrees of freedom to be sampled
during the course of a simulation. These may be formulated
Perspective
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4. Implementation of multipolar
electrostatics
4.1
AMOEBA
Table 2 The number of geometric minima predicted by a variety of force fields for serine and cysteine. Also given are the number of minima that the
various force fields predicted but that were not represented in the set of minima generated by ab initio calculations, and the mean average deviations
(MAD) for the molecular energies at each geometry
Serine
AMBER94
MM2
MM3
MMFFs
OPLS_2005
AMBER99
CHARMM27
AMOEBA
21
1
4.8
8.9
19
2
10.5
10.7
15
3
20.0
14.0
27
6
22.2
7.4
23
3
13.0
4.1
21
7
33.3
10.9
19
2
10.5
11.1
34
7
20.6
4.2
Cysteine
AMBER94
MM2
MM3
MMFFs
OPLS_2005
AMBER99
CHARMM27
AMOEBA
23
1
4.3
6.3
23
1
4.3
10.0
21
3
14.3
13.9
28
7
25.0
5.4
25
3
12
4.6
29
5
17.2
5.4
21
5
23.8
6.6
44
1
2.3
3.1
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Perspective
SIBFA
Table 4 Dimerisation energies for formamide and glycyl dipeptide systems computed at the SCF level of theory and SIBFA force field (kJ mol1).
Also given are the energies resulting from individual multipolemultipole
interaction ranks
Dierence, d
Formamide
Glycyl dipeptide
ECoulomb(SCF)
ECoulomb(SIBFA)
22.1
20.9
14.3
13.2
7.8
7.7
E00(SIBFA)
E10(SIBFA)
E11(SIBFA)
E20(SIBFA)
E21(SIBFA)
E22(SIBFA)
16.2
1.6
0.5
3.1
0.1
0.5
20.0
5.8
0.6
1.8
1.0
0.8
3.8
7.4
1.1
4.9
1.1
1.3
Table 3 Free energies of hydration for a variety of molecules predicted by use of AMOEBA and TIP3P-like water potentials. Corresponding experimental
values are also given. Energies are in kcal mol1
AMOEBA
TIP3P-like
Experiment
Ethylbenzene
p-Cresol
Isopropanol
Imidazole
Methylethyl sulfide
Acetic acid
RMSD
0.73
0.89
0.70
7.26
10.72
6.10
5.58
5.29
4.70
10.11
10.87
9.6
1.78
2.94
1.50
5.69
7.46
6.70
0.68
1.96
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not realistic. Upon integration into a larger system, the intensity of the various multipole moments will decrease significantly due to interaction between the formate moiety and the
methylammonium species. Analysis of Etot for this scheme
demonstrates the recovery from these overly emphasised multipole moments by compensating through a smaller polarisation
energy for these fully charged species. However, it should be
pointed out that all isomer relative energies are correctly
recovered by both schemes, with the exception of the Coulombic energy of one isomer as predicted by SIBFA-1. Nevertheless,
analysis of the total energies reveals that SIBFA performs far
better than conventional non-polarisable force fields.
Classical force fields have attempted to cling onto life by
giving the illusion of the accounting for anisotropic electronic
features by the addition of o-centre partial charges. The
authors of SIBFA appear to have hit the final nail in the con
of these classical force fields. These o-centre partial charges
are empirically localised, i.e. placement on expected lone pair
sites. However, these sites appear directly as a consequence of
the implementation of multipolar electrostatics.196 This is most
evident when considering halogen bonding. Energy Decomposition Analysis (EDA) was performed on a system of halobenzenes interacting with two possible probes (the divalent
cation Mg2+ and water) with the Reduced Variational Space
Analysis (RVS) and the aug-cc-pVTZ(-f) basis set. Fig. 8 demonstrates the angular preference for the CX P interactions for
the various halobenzenes (where X = F, Cl, Br or I and P = Mg2+,
H or O). Analysis of the Coulombic portion of the EDA shows
that the cation preferentially interacts with out of bond-axis
electronic features in both the chloro- and bromobenzene
species as a result of the s-hole. It is also immediately evident
that the multipolar electrostatics implemented in SIBFA
directly superimposes on these curves. As such, the effect of
Fig. 8 Energetic profiles as a function of the CX P angle for (from top left, clockwise) fluorobenzene-, bromobenzene-, and chlorobenzene-Mg2+
systems. Energy from the SIBFA force field is marked in red while Coulombic energy from the Reduced Variational Space (RVS) scheme is in blue.
Energetic minima that are not situated at 1801 are hallmarks of halogen bonding. [Source: J. Compt. Chem., 2013, 34, 1125.]
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the s-hole can be accounted for by multipole moments, without the need for fictitious empirical partial charges. Further
decomposition of the SIBFA electrostatic energy was conducted,
whereby it was found that whilst the monopolemonopole
interaction favours a simple y = 1801 angular conformation, it
is largely due to the monopolequadrupole that this conformation is favoured. Preference for the quasi-perpendicular conformations is dictated by the monopoledipole interaction. The
authors suggest that for a perfect superposition of the two
curves, higher-order multipole moments may be required.
4.3
NEMO
Perspective
5. Conclusions
In general, the electrostatic interaction between atoms cannot
be described accurately when using only one partial charge per
atom. Nevertheless, the point-charge paradigm continues to
dominate contemporary molecular simulation, with the vast
majority of practitioners either ignoring or being unaware of
the scientific repercussions of this paradigm. It is important that the
computational community has the will to progress beyond this
paradigm, especially because a solution is available: multipolar
electrostatics. In fact, this solution has been available for a long
time but an irreversible embrace of it remains absent, sadly. Journal
editors should also help overcoming this unacceptable status-quo.
Currently availability computing power oers the opportunity to
finally make a step change in the modelling of electrostatics at a
time when, certainly in the area of biomolecular simulation, the
trust of experimentalists towards computational predictions needs
to be gained. Errors of a few kilojoules per mole can already be
enough to draw the wrong qualitative conclusion from a calculation. How the use of point-charges can then be perpetuated at short
and medium range is baing. We hope that this perspective has
made a convincing case by collecting and reporting the evidence
against point-charges. The message should be clear but it now
remains to be seen if a combination of powerful computers and
scientific goodwill will finally realise a long overdue transition to
multipolar electrostatics.
Acknowledgements
We thank Dr MS Shaik for his help in the preparation of a very
early draft of this manuscript. Gratitude is due to BBSRC for
providing a PhD studentship for SC, and we also thank EPSRC
for funding a PhD studentship for TJH with sponsorship from
AstraZeneca Ltd.
References
1 V. Hanninen, T. Salmi and L. Halonen, J. Phys. Chem. A,
2009, 113, 71337137.
2 M. W. Mahoney and W. L. Jorgensen, J. Chem. Phys., 2000,
112, 89108922.
3 A. J. Stone, in The Theory of Intermolecular Forces, ed.
J. S. Rowlinson, Clarendon Press, Oxford, 1st edn, 1996.
4 A. Raval, S. Piana, M. P. Eastwood, R. O. Dror and
D. E. Shaw, Proteins: Struct., Funct., Bioinf., 2012, 80,
20712079.
5 G. B. Arfken and H. J. Weber, Mathematical Methods for
Physicists, Academic Press, San Diego, California, USA,
1995.
6 P. L. A. Popelier and A. J. Stone, Mol. Phys., 1994, 82,
411425.
7 G. A. Cisneros, M. Karttunen, P. Ren and C. Sagui, Chem.
Rev., 2014, 114, 779814.
8 J. P. Ritchie and A. S. Copenhaver, J. Comput. Chem., 1995,
16, 777789.
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