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doi: 10.1111/j.1600-0587.2012.07922.x
2013 The Authors. Ecography 2013 Nordic Society Oikos
Subject Editor: Catherine Graham. Accepted 27 November 2012
Disturbances related to geomorphological processes are frequent, widespread and often intense at high latitudes and altitudes, aecting the ne-scale distribution of many plant species. While the inclusion of physical disturbances into models
of species geographic ranges is widely recommended, no studies have yet tested the utility of eld-quantied geomorphological disturbances for terrestrial species distribution modelling. Here we apply generalized additive models and boosted
regression trees to examine if the explicit inclusion of terrestrial and uvial geomorphological variables alters species distribution models for 154 vascular plant, bryophyte and lichen species in north European mountain tundra. The inclusion of these disturbances signicantly improved both the explanatory and predictive power of distribution models, with
consistent results for all three species groups. Spatial distribution predictions changed considerably for some species after
the inclusion of disturbance variables, with uvial disturbances generating strongly linear features for species inuenced by
erosion or sediment deposition. As a consequence, models incorporating geomorphological variables produced markedly
more rened distribution maps than simpler models. Predictions of species distributions will thus benet strongly from
the inclusion of ne-scale geomorphological variables, particularly in areas of active earth surface processes, enabling more
accurate forecasting of future species ranges under changing conditions.
Methods
Data collection
Data were collected from 270 sites in north-western
Finland and Norway, along 18 altitudinal transects in the
sub-continental northern Scandes (ca 69N, 2050E).
Four 1 m2 plots, located 5 m from the centre of each site,
were surveyed at each site, resulting in a total of 1080
plots for analysis. The cover and identity of all vascular
plants, bryophytes and lichens in each plot were recorded
building. BRTs can model complex functions and automatically incorporate interactions between predictors. As
GAMs and BRTs gave similar results, only those from the
GAM analyses are presented here (detailed BRT methodology and results are presented in Supplementary material
Appendix 1, Table A1 and Fig. A1, A2).
To test if the inclusion of the two disturbance variables
signicantly improved the t of species distribution models,
we followed the methodology of Zimmermann et al.
(2009) and le Roux et al. (in press), rst modeling each species occurrence as a function of simple topographysoil
climate variables:
Presence/Absence Soil moisture Radiation
Soil quality TempJuly
(simple model)
Next, we incorporated terrestrial and uvial geomorphological disturbances into the model
Presence/Absence Soil moisture Radiation
Soil quality TempJuly Disturbterr
Disturbuv
(full model)
Simple and full models for each species were tted to the
calibration dataset and an ANOVA (implementing a Chi2
test) was used to test if the full model provided a signicantly
better t to the calibration data than the simple model.
The explanatory power of both models was assessed by
comparing the adjusted R2 for all relationships (i.e. the
proportion of variance explained, after accounting for the
dierent numbers of explanatory variables in simple and
full models). The relative importance of predictor variables
was assessed from calibration models from each variables
drop contribution (i.e. change in deviance associated
with exclusion of a given variable from a model containing
all the other variables). Variables contributions were
scaled so as to sum to 100, with higher numbers indicating
stronger inuence on the response.
The predictive power of the models was determined
by testing the accuracy of predictions made for the validation dataset (i.e. data that was not used in model development), calculating the area under the curve of a receiver
operating characteristic plot (AUC; Fielding and Bell
1997) and the true skill statistic (TSS; Allouche et al.
2006). A non-parametric Wilcoxons matched pairs test
was used to compare if the explanatory power and predictive accuracy of the simple and full models diered
signicantly. Both explanatory accuracy and predictive
ability of models are considered, so as to evaluate models
ability to explain local phenomena and to predict to independent data.
Predicting species ne-scale distribution
To visualize the distribution patterns predicted by each
species best-t distribution models (and the resulting patterns of species richness), an area of 3.1 5.2 km in the
centre of our study region (covering the Saana and, partially,
Jehkats massifs) was divided in 25 25 m cells. A 1 m2
plot in the centre of each cell was used for all calculations
and predictions. Soil moisture and solar radiation for each
plot was calculated from the 10 m resolution DEM, and soil
quality and mean temperature of the hottest month were
downscaled from the available data (following the methods
described above). The intensity of geomorphological disturbances were mapped across the prediction area using
the DEM, false-colour aerial photographs (0.5 m spatial
resolution), and extensive eld surveys. From the cover
of these active terrestrial and uvial geomorphological processes the intensity of geomorphological disturbances was
estimated for each plot in the prediction area (following
Hjort and Luoto 2009, 2011, Virtanen et al. 2010;
Supplementary material Appendix 2, Fig. A3). Best-t
simple and full models were then used to predict the occurrence of each species across this landscape, with species
richness for each cell calculated as the sum of predicted
species occurrences (repeated for simple and full models).
Predicted probabilities of occurrence were converted to
presence/absence predictions using the threshold value maximizing sensitivity specicity (Liu et al. 2005).
Results
Models including the two geomorphological disturbance
variables provided a better t to calibration data than simple
topographysoilclimate models, with 81% of full models
(124 of 154 species with adequate records in the calibration
Adjusted R
AUC
TSS
Simple model
(mean SE)
Full model
(mean SE)
Wilcoxon
V
19.5 1.0
82.5 0.7
51.0 1.3
25.7 1.1
84.5 0.6
54.1 1.3
27
1888
3461
0.001
0.001
0.001
Figure 1. The relative importance of explanatory variables as calculated from generalized additive models: (a) variable importance for the
simple (D: topographysoilclimate variables) and full (D: topographysoilclimatedisturbance) models, and (b) the distribution
of the combined importance of terrestrial and uvial disturbances for all species. In (a), empty circles indicate the maximum importance
for each variable across all 154 species modeled and standard error bars are omitted as they are too small to display clearly (all SE 2).
Rad. solar radiation, Moist. soil moisture, Qual. soil quality, Temp. mean July temperature, Fluv. uvial disturbance, Terr.
terrestrial disturbance.
803
804
Discussion
The results from this study clearly support previous
hypotheses (Dirnbck and Dullinger 2004, Randin et al.
2009) that the inclusion of geomorphological processes
improves predictions of species distributions. This is in
agreement with the perceived role of geomorphology in
inuencing plant ecology in high latitude and altitude
ecosystems (Krner 2003, Nagy and Grabherr 2009,
Malanson et al. 2012). Our results show that incorporating
measurements of terrestrial and uvial geomorphological
processes strengthens species distribution models explanatory accuracy (i.e. ability to model the observed data)
and predictive power (i.e. ability to extrapolate results to
independent datasets). These ndings were consistent
for vascular plants, bryophytes and mosses, despite fundamental dierences between these groups of species (Molau
and Alatalo 1998), highlighting that the inclusion of
geomorphological variables benets species distributions
models across multiple taxa. Thus, geomorphological variables have non-trivial eects for the predictions of the current species distributions, and these should be carefully
considered in the context of constructing climate change
impact models.
Geomorphological variables exhibited considerable
importance for the majority of species, and very high
importance for a subset of the species (consistent with
Randin et al. 2009). Therefore, in agreement with other
studies examining the inuences of disturbances (Tucker
et al. 2012), species showed a wide range of responses to the
same geomorphological disturbances. Consistent improvements in model performance across all species grouping
(vascular plantsbryophyteslichens, and borealarcticalpine) suggests that inclusion of geomorphological variables can improve species distribution models for dierent
taxa. However, species response curves reveal that these
groups dier in their dominant responses to uvial and
Figure 3. Modeled distribution of Saussurea alpina in a 3.1 5.2 km area in the centre of our study region, based on the predictions of
(a) simple and (b) full generalized additive models. Grey indicates predicted areas of occurrence, and black indicates lakes and ponds.
Latitude and longitude are indicated in the Finnish coordinate system with contours representing altitude (m a.s.l.).
References
Allouche, O. et al. 2006. Assessing the accuracy of species distribution models: prevalence, kappa and the true skill statistic
(TSS). J. Appl. Ecol. 43: 12231232.
Austin, M. P. and Van Niel, K. P. 2011. Improving species distribution models for climate change studies: variable selection
and scale. J. Biogeogr. 38: 18.
Beven, K. J. and Kirkby, M. J. 1979. A physically-based variable
contributing area model of basin hydrology. Hydrol. Sci. B
24: 4369.
Cannone, N. et al. 2007. Unexpected impacts of climate
change on alpine vegetation. Front. Ecol. Environ. 5:
360364.
Cardinale, B. J. and Palmer, M. A. 2002. Disturbance moderates
biodiversity-ecosystem function relationships: experimental
evidence from caddisies in stream mesocosms. Ecology
83: 19151927.
Chapin, F. S. III and Shaver, G. R. 1985. Individualistic growth
response of tundra plant species to environmental manipulations in the eld. Ecology 66: 564576.
Connell, J. H. 1978. Diversity in tropical rain forests and coral
reefs high diversity of trees and corals is maintained only
in a non-equilibrium state. Science 199: 13021310.
Dahl, E. 1956. Rondane: mountain vegetation in south Norway
and its relation to the environment. Aschehoug.
Death, G. 2007. Boosted trees for ecological modeling and
prediction. Ecology 88: 243251.
Dirnbck, T. and Dullinger, S. 2004. Habitat distribution
models, spatial autocorrelation, functional traits and
dispersal capacity of alpine plant species. J. Veg. Sci. 15:
7784.
Dormann, C. F. and Woodin, S. J. 2002. Climate change in
the Arctic: using plant functional types in a meta-analysis of
eld experiments. Funct. Ecol. 16: 417.
Elith, J. et al. 2006. Novel methods improve prediction of
species distributions from occurrence data. Ecography 29:
129151.
Elith, J. et al. 2008. A working guide to boosted regression trees.
J. Anim. Ecol. 77: 802813.
ESRI 1991. ARC/INFO users guide. Cell-based modelling with
GRID. Analysis, display and management. Environment
Systems Research Inst.
Fielding, A. H. and Bell, J. F. 1997. A review of methods for
the assessment of prediction errors in conservation presence/
absence models. Environ. Conserv. 24: 3849.
Fox, J. F. 1985. Plant diversity in relation to plant-production
and disturbance by voles in Alaskan tundra communities.
Arct. Alp. Res. 17: 199204.
807
808