Escolar Documentos
Profissional Documentos
Cultura Documentos
Research:
Masters Thesis (2015): Killing Two Birds with One Stone: The Concurrent
Development of the Novel Alignment Free Tree Building Method, Scrawkov-Phy, and the
Extensible Phyloinformatics Utility, EMU-Phy
Available at http://scholarworks.rit.edu/theses/9000/
Primary Advisor: Dr. Larry Buckley | Committee: Dr. Larry Buckley, Dr. Michael Osier, Dr.
Gregory Babbitt.
expression profile of Vitis. Research was performed in a group including two other
individuals. Mentor: Dr. Michael Osier
USC Wrigley Institute NSF Summer REU Fellow (2014): The Identification and
Quantification of deep bacterial and archaeal communities at the San Pedro Ocean
Time-series (SPOT) station using metagenomic and metatranscriptomic analyses
Performed marine microbiology research under Dr. John Heidelberg and USC Graduate student
Rohan Sachdeva. Identified and quantified bacterial and archaeal communities and their activity
at 885meters below sea level. QIIME, mothur, Geneious, Bio-python, and R programs used.
Mentors: Dr. John Heidelberg, Rohan Sachdeva, Dr. Diane Kim
Cancer Informatics (2014-present): Searching for Oncogene targets for Novel miRNA
therapies
Using TGDB, COSMIC, and miRBase, I have begun computationally looking for potential
targets for synthetic microRNA therapies that present heightened specificity to the oncogenic
form of the proto-oncogene. Note: This project is without mentorship.
Education/
Outreach:
Spoke about the role of bioinformatics in the field of cell physiology and the potential
for incorporating bioinformatic methodologies to supplement and guide wet-bench cell
physiology research. Continued support, consultation, and guidance on the course
projects was provided. Contact/Instructor: Dr. Beth VanWinkle
Guest Lecturer/Scientific Outreach (Summer 2015): Science, Biology, and You
Gave guest lectures at New Americas Charter School in Las Cruces, NM about everyday
science, the nature of living things, and how design experiments. New Americas Charter
School aims to empower new immigrants, English language learners, and academically
underserved students. See: http://newamericaschool.org/newmexico/campuses-lascruces/
ImagineRIT Creativity and Innovation Festival Exhibitor (2012, 2013, 2014, 2015):
2012 How Genetics Works: Preformed a hands-on presentation about genetics and population
genetics to layman community.
2013 CSI Debunked: The Truth about Forensics: Preformed a hands-on forensics presentation,
including a simple HTML game, aimed at debunking common misconceptions about forensics.
Was lead exhibitor and coordinator.
2014 CSI Debunked: The Truth about Fingerprints: Presented a hands-on activity about
forensics, focusing on how fingerprinting and DNA fingerprinting work. Was lead exhibitor and
coordinator.
2014 Pokmon Phylogenetics: Designed and presented a cladistics exercise geared towards
teaching systematics to children. Was lead exhibitor and coordinator
2015 The Science of Superheroes: Designed and presented a series of interactive modules to
engage people in scientific learning, using superheroes as case studies. Stress was put on
communication in the scientific community. Was lead exhibitor and coordinator
Celebrate Science and Mathematics (2014): Rochester Institute of Technology COS
2015: Presented an adapted version of the Science of Superheroes exhibit described above.
2014: Presented an adapted version of the Pokmon Phylogenetics exhibit described above.
Goodbye-Goodbuy (2015): Rochester Institute of Technology
Volunteered for a student organized attempt at reducing the waste of usable materials often
discarded at the end of the year. Recovery of furniture, non-perishable food, and other materials
was the focus.
Skills:
Awards:
Coursework
(by Major):
Bioinformatics:
Molecular Modeling and Proteomics, Mechanics of Programming, Bioinformatics,
Computer Science I&II, Bioinformatics Seminar, Bioinformatics Languages, Databases
and Data Modeling, Bioinformatics Algorithms, Statistical Models for Bioinformatics,
Genetic Diseases and Disorders, Concepts of Parallel and Distributed Systems, Highthroughput Sequence Analysis, Pedagogy of Bioinformatics Databases, Directed
Research in Bioinformatics: Machine Learning, Ethics in Bioinformatics
Biotechnology:
Genetic Engineering, Cancer Biology, Genomics, Genetics, Bioinformatic Analysis of
Macromolecules, Tissue Culture, Biological Separations, Evolutionary Biology,
Microbiology, Cell Biology, Molecular Biology, Ornithology, Human Genetics
Special Topics in Molecular Evolution and Genomics
Other:
Intermediate Spanish I-III, Medical Informatics Seminar, Scientific Paper Writing,
General Chemistry I-III, Organic Chemistry I-III, Biochemistry I&II, Discrete
Mathematics, Physics I&II, Data Analysis, Calculus I&II.
Data scrubbed large database of medically relevant information and reformatted it for
local application to expand medical literature search and potential user list.
Performed database unions on local database with new large database
Summarized data into a human readable format.
Fall 2015
Contact: info@medumail.com
Contract Software Developer: Vaccinex Inc, 1895 Mt. Hope Ave Rochester,NY 14620
Publications: DNARNA: What Do Students Think the Arrow Means? L.Kate Wright, J. Nick Fisk, Dina
Newman CBELife Sciences Education Vol. 13, 338348, Summer 2014
Development of the Central Dogma Concept Inventory (CDCI) Assessment Tool. Dina Newman,
Christopher Snyder, J. Nick Fisk, L. Kate Wright CBELife Sciences Education Vol. 15, 114,
Summer 2016
Unique chromatin organization associated with in vivo DNA binding of the tumor
suppressor p53. Feng Cui, Peter LoVerso, Feifei Bao, J. Nick Fisk (Pending revisions)
Posters/Presentations:
2016 RIT CASTLE (Center For Adavncing STEM Teaching, Learning, and Evaluation)
Annual Spring Poster Symposium Development of CDCI-SHiNE, an R-based Web
Application for the Analysis of Results from the Central Dogma Concept Inventory
(CDCI)" J. Nick Fisk, Chistopher Snyder, Dina Newman, L. Kate Wright
2015 RIT Gosnell School of Life Sciences SlideSlam: What do Iguanas, Cancer,
Students, Microbes, and Pokmon have in Common? | Gave a presentation of my
research experiences as an undergraduate and graduate student at RIT, with particular
focus on encouraging undergraduates to seek out a diverse range of research experiences
both at RIT and through the vaious REU and SURF programs around the county. The
presentation was part of a seminar series where faculty and researchers present short
slides about their research in GSOLS. Nick Fisk, Dr. Dina Newman
2014 USC Wrigley Institute for Environmental Studies NSF REU Research Symposium:
The Identification and Quantification of deep bacterial and archaeal communities at
the San Pedro Ocean Time-series (SPOT) station using metagenomic and
metatranscriptomic analyses Nick Fisk, Rohan Sachdeva, Dr. John Heidelberg
SABER 2014 Development of a Central Dogma Concept Inventory (CDCI) for Use at
All Levels of Undergraduate Biology Dina L. Newman, J. Nick Fisk, Christopher Snyder,
L. Kate Wright
Workshops: Bioinformatics Workshop on Next Generation Sequencing. Presented by Dr. Han Ming
Gan and Ms. Mun Hua Tan (MONASH UNIVERSITY) | May 26-May 28, 2015
Topics covered included NGS technologies, BioLinux, Local Blast, HMMsearch, Microbial
Genome Assembly and Annotation, Microbiome analysis (QIIME), Mitogenome Assembly and
Annotation, and Mitogenomic phylogenitcs (MitoPhAST).
Professional Development in the Sciences. Presented by Dr. Diane Kim and Dr. Karla
Heidelberg| July 29-30, 2014
Topics covered included scientific presentation, networking, CV and resume development,
graduate school application, communication with potential collaborators, and investigation of
graduate programs.
NSF Graduate Research Fellowship Program Application Preparation for 2016 GRFP.
Presented by Dr. Hector Flores, Dr. Raymond Ptucha, and Dr. Christy Tyler | September
2015
Topics covered included scientific writing, specifically for grants; the requirements for the
GRFP; and the discussion of potential, qualifying graduate projects for the GRFP.
Graduate Workshop in Public Speaking. Presented by the Tiger Tales Toastmasters Club
at RIT | October 2015
Topics covered included technical and casual speaking for Graduate students and professionals.
Tips on speaking to engage an audience and reduce presentation anxiety were discussed. The
seminar concluded with a series of mock-speeches on a variety of professional and nonprofessional topics with feedback from both the other participants and a panel of experts.
Field Ornithology Seminar Series and Birdwalk. Presented by Dr. Jed Burtt (Ohio
Wesleyan University) | April 2-April 3, 2015
Topics covered included the Evolution of Color in Avian Species, the founding of American
ornithology, and the role of undergraduates in research endeavors. The seminar series concluded
with a birding excursion lead by Dr. Jed Burtt.
Professional
Memberships:
Society for the Study of Evolution (2016-present)
International Society for Computational Biology (2014-present)
Systematics Association (2014-present)
ONSA: American Ornithologists Union (2015-present)
Activities:
RIT Men's Division III Wrestling Volunteer Coach (2015-Present)
Volunteer Coach
Volunteer Tutor and held office hours in addition to study sessions.
RIT Men's Division III Wrestling Team: (2011-2015):
3 Time Academic All-Conference Team
Volunteer tutor and leader at organized, weekly study sessions.
Interim Captain
3 Time NCAA Regional Qualifier
Bioinformatics Journal Club: Public Relations Officer (2013-Present)
Biology Education Research Group (2012-Present): Peer evaluation and Journal Studies
Research Scholars (Biology) at RIT (2013-Present)
Pokmon League at RIT (2014-Present)
RIT College of Science Student Ambassador (2014-Present)
RIT GSOLS Student Representative (2013-Present)