Primero descargamos el archivo jh2.0 en este caso de JavaHelp.

Despues ponemos los classpath de windows:

Tambien en classpath:
C:\jh2.0\javahelp\bin;C:\jh2\javahelp\lib;C:\jh2\javahelp\bin;C:\jh2;

Nos movemos a la ruta donde se creara el Java Help o donde tenemos la Aplicacion con javaHelp:
cd C:\Users\SMEI001\Dropbox\ikMeterTool\src\main\java\com\smei\meterreadingtool\javahelp

Para indexar los htmls despues de habernos movido a la ruta de la aplicacion donde se generara el
javahelp ejecutamos el siguiente comando que consta de la ejecucion del jhindexer.jar y de la ruta
donde se encuentran los html a indexar:
java -jar "C:\jh2\javahelp\bin\jhindexer.jar"
C:\Users\SMEI001\Dropbox\ikMeterTool\src\main\java\com\smei\meterreadingtool\javahelp\html

Para terminar ejecutamos desde linea de consola como para aclarar los index:
java -jar "C:\jh2\javahelp\bin\jhindexer.jar" HTML -verbose
Un ejemplo real de la indexacion de JavaHelp:

Microsoft Windows [Versin 6.1.7601]

Copyright (c) 2009 Microsoft Corporation. Reservados todos los derechos.

C:\Users\SMEI001>jhindexer C:\Users\SMEI001\Dropbox\ikMeterTool\src\main\java\co
m\smei\meterreadingtool\javahelp\html
Error: Unable to access jarfile C:\jh2\javahelp\bin\javahelp\bin\jhindexer.jar
C:\Users\SMEI001>jhindexer C:\Users\SMEI001\Dropbox\ikMeterTool\src\main\java\co
m\smei\meterreadingtool\javahelp\html
Error: Unable to access jarfile C:\jh2\javahelp\bin\javahelp\bin\jhindexer.jar
C:\Users\SMEI001>java -jar "C:\jh2.0\javahelp\bin\jhindexer.jar" C:\Users\SMEI00
1\Dropbox\ikMeterTool\src\main\java\com\smei\meterreadingtool\javahelp
Error: Unable to access jarfile C:\jh2.0\javahelp\bin\jhindexer.jar

C:\Users\SMEI001>java -jar "C:\jh2\javahelp\bin\jhindexer.jar" C:\Users\SMEI001\

Dropbox\ikMeterTool\src\main\java\com\smei\meterreadingtool\javahelp

C:\Users\SMEI001>java -jar "C:\jh2\javahelp\bin\jhindexer.jar" C:\javahelp\html

C:\Users\SMEI001>cd C:\javahelp\html

C:\javahelp\html>cd ..

C:\javahelp>java -jar "C:\jh2\javahelp\bin\jhindexer.jar" C:\javahelp\html

C:\javahelp>cd C:\Users\SMEI001\Dropbox\ikMeterTool\src\main\java\com\smei\meter
readingtool\javahelp

C:\Users\SMEI001\Dropbox\ikMeterTool\src\main\java\com\smei\meterreadingtool\jav
ahelp>java -jar "C:\jh2\javahelp\bin\jhindexer.jar" C:\Users\SMEI001\Dropbox\ikM
eterTool\src\main\java\com\smei\meterreadingtool\javahelp\html

C:\Users\SMEI001\Dropbox\ikMeterTool\src\main\java\com\smei\meterreadingtool\jav
ahelp>java -jar "C:\jh2\javahelp\bin\jhindexer.jar" HTML -verbose
File: 'HTML\foo1.html'
URL: 'HTML/foo1.html'
File: 'HTML\foo10.html'
URL: 'HTML/foo10.html'
File: 'HTML\foo11.html'
URL: 'HTML/foo11.html'
File: 'HTML\foo2.html'
URL: 'HTML/foo2.html'
File: 'HTML\foo3.html'
URL: 'HTML/foo3.html'
File: 'HTML\foo4.html'
URL: 'HTML/foo4.html'
File: 'HTML\foo5.html'
URL: 'HTML/foo5.html'
 File: 'HTML\foo6.html'
URL: 'HTML/foo6.html'
File: 'HTML\foo7.html'
URL: 'HTML/foo7.html'
File: 'HTML\foo8.html'
URL: 'HTML/foo8.html'
File: 'HTML\foo9.html'
URL: 'HTML/foo9.html'
File: 'HTML\main.html'
URL: 'HTML/main.html'
Parse time: 0.558 s

C:\Users\SMEI001\Dropbox\ikMeterTool\src\main\java\com\smei\meterreadingtool\jav
ahelp>
C:\Users\SMEI001\Dropbox\ikMeterTool\src\main\java\com\smei\meterreadingtool\jav
ahelp>

https://www.google.com/search?
q=i+cant+seach+javahelp&oq=i+cant+seach+javahelp&aqs=chrome..69i57j69i65l2j69i59j69i60l2.3855j0j7&sourceid=chrome&es_sm=
122&ie=UTF-8#q=i+cant+search+javahelp&spell=1

http://www.postseek.com/meta/936e3d5946f0479755feb14f051cd385

https://community.oracle.com/thread/1305026

https://www.google.com/search?
q=full+search+index&oq=full+search+index&aqs=chrome..69i57&sourceid=chrome&es_sm=122&ie=UTF-
8#q=full+search+index+in+this+help+root+directory++jhindexer

http://www.postseek.com/meta/e644631aca79e4d7a06306b79b9dcb5c

https://community.oracle.com/thread/1305326

https://forums.adobe.com/message/4624201#4624201

https://community.oracle.com/thread/1305242

https://www.google.com/search?
q=how+to+use+jh2.0&oq=how+to+use+jh2.0&aqs=chrome..69i57j69i65l2j69i59l3.4127j0j7&sourceid=chrome&es_sm=122&ie=UTF-
8#q=how+to+use+jh2.0+jhindexer

http://www.dita2go.com/ohug/z110x1083190.htm

https://www.google.com/webhp?sourceid=chrome-instant&ion=1&espv=2&ie=UTF-8#q=Failed+to+create+URL+from+file:+javahelp

http://www.postseek.com/meta/06e1136223a7c8801c36c8b6a93ffc33

https://community.oracle.com/thread/1305245

https://community.oracle.com/thread/1305128

https://community.oracle.com/thread/1304602