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s. II a. Biologie vegetal, 2012, 58, 2: 5-18 ISSN: 1223-6578, E-ISSN: 2247-2711
Introduction
The reduction of diseases incidence and severity in plants following soil amendment
with some Pseudomonas and Bacillus strains was often observed (Benhamou et al., 2000).
The importance of these two bacterial groups among the PGPBs (Plant Growth-
Promoting Bacteria) is determined by the characteristics exhibited by these two genera.
These bacteria have a wide range of biochemical equipments that contribute to their
capacity to suppress pathogens. They have different mechanisms of action, both direct,
through which bacteria influence the pathogens growth or the plant resistance, and
indirect, through which bacteria stimulate the plant development, decreasing in this way the
risk of infection.
Recent progress in the identification of antifungal metabolites led to the idea that
plant protection against fungal pathogens is provided in part by production of bacterial
antibiotics associated with a possible competition for nutrients and iron in the rhizosphere
1
Institute of Biology, Romanian Academy, Department of Plant and Animal Cytobiology, Splaiul Independentei
296, 060031 Bucharest, Romania. e-mail: monica.carasan@ibiol.ro (corresponding author)
2
Faculty of Biotechnology, University of Agronomical Sciences and Veterinary Medicine, Bd. Mrti No. 59,
71331 Bucharest, Romania
Mitoi, M.E. et al., 2012/ An. Stiint. Univ. Al. I. Cuza Iasi, Sect. II a. Biol. veget., 58, 2: 5-18
(Benhamou et al., 2000). Pseudomonads and bacilli have the capacity to colonize the
rhizosphere and phylosphere (O`Sullivan and O`Gara, 1992), and to produce metabolites
with antagonistic activity, such as antibiotics: 2,4 diacetylphloroglucinol, phenazyne,
pyrrolnitrin, pyoluteorin, cyclic lipopeptides synthesized by Pseudomonas spp. (Brencic
and Winans, 2005; Lee et al., 2003; Shanahan et al., 1992) or oomycin, zwittermicin A,
kanosamine and lipopeptides produced by Bacillus spp. (Bais et al., 2004 ; Compant et al.,
2005 ; Handelsman and Stabb, 1996). Moreover, these bacteria are able to excrete
siderophores, such as pyoverdin and pyochelin produced by Pseudomonas spp. (Whipps,
2001) or to exhibit hyperparasitic activity, attacking pathogens by excretion of cell wall
hydrolases like chitinases, -glucanases, laminarinases or proteases (Compant et al., 2005;
Whipps, 2001).
Most of the studies concerning the antifungal activity of some rhizobacteria are
focused on the identification and purification of antibiotics, but little attention has been paid
to the fungal responses to these compounds. Although the activity of antifungal compounds
with chemically different structures is well documented, scarce data exist on the effects of
these natural fungicides, on the morphology and ultrastructure of fungal pathogens
(Romero et al., 2007; Souza et al., 2003; Thimon et al., 1995), and therefore, their mode of
action remains unclear.
Analyses of the antagonistic interactions at cellular level are not so numerous and
focus on the relationships established between the plant, pathogen and antagonist
(Benhamou et al., 2000; Cherif et al., 2003; El-Ghaouth et al., 1998). Recently, new
microscopic techniques were developed for monitoring the relationships between the
antagonist bacteria and plant pathogen in rhizosphere (Tombolini et al., 1999; Troxler et al.,
1997) or to determine subcellular changes in the eukaryotic pathogen during interaction
with the antagonistic prokaryote (Deora et al., 2006).
Most studies on the sensitivity of plant-pathogenic fungi take into account only one
species or isolate of antagonist bacteria and consider only one particular stage in the life
cycle of a pathogen, usually mycelial growth (Souza et al., 2003).
In this study, the inhibitory activity of selected strains of Pseudomonas aeruginosa
with highly degrading capacities, used in soil bioremediation, and some strains obtained
from Bacillus licheniformis by mutagenesis and transformation (Mateescu et al., 2003;
Mateescu et al., 2005) was tested on fungal necrotrophic pathogens as Alternaria alternata,
Pythium debaryanum, Fusarium oxysporum and Botrytis cinerea strains. The antagonistic
reaction between the two partners was monitored by macroscopic and microscopic
observations in different stages of cocultivation of selected bacteria with two Alternaria
alternata strains. The direct contact of bacteria with mycelium and spores was observed by
light microscopy and the cellular modifications induced by the antagonistic interaction
between the two partners were studied on transmission electron micrographs.
Biological material
The bacterial strains used in this study were Pseudomonas aeruginosa (strains P7,
P14, P18), Bacillus licheniformis (B40, tB40, mB40). Pseudomonads used in experiments
are Romanian isolates from oil polluted areas that were identified and characterized using
Biolog system and molecular techniques (ITS-RFLP) (Cornea et al., 2006). The Bacillus
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graded series of 10-100% (v/v) ethanol. The samples were washed twice with propylene
oxide and finally embedded in Epon 812 resin.
The samples were ultrasectioned at ultramicrotom (LKB, Sweden) with diamante
knife and ultrathin sections were stained according to Reynolds double coloration
(Reynolds, 1963), before examination with an EM-125 (Selemi, Ukraine) transmission
electron microscope at 50 kV.
Results
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strain presented a peak of activity from the second day (Table 1). The color of the
mycelium changed from pink to brown in the presence of Pseudomonas strains.
An increased inhibitory activity was observed by mixing the bacterial strains belonging to
the same genus, proving a synergistic action.
When the inhibitory activity of the bacterial strains was tested on liquid medium, a
poorly developed fungal mycelium, compared with the control, could be observed. Some
differences between the fungal mycelium treated with bacilli or pseudomonads were
detected. In the presence of Bacillus licheniformis strains, the fungal mycelium was more
developed on the walls of the test tube, while in presence of Pseudomonas aeruginosa, the
mycelium had a limited growth, at the surface of the medium. Moreover, in the case of
Pseudomonas Alternaria cocultivation, the color of the medium became yellow and
fluorescent under UV illumination, proving the synthesis of fluorescent pigments by the
bacterial strains. Initially, the color appeared as a ring at the interface between the growth
area of fungus and bacteria, and the coloration spread afterwards in the entire volume of the
culture.
The aspect of fungi and bacteria cocultures in light microscopy
In the early stages of Pseudomonas aeruginosa and Alternaria alternata
cocultivation, the fungal hyphae were rare and isolated from the bacterial colonies (Plate I
e). These results could be due to the synthesis of some diffusible compounds which
inhibited the fungal development. In coculture with bacilli, clusters among hyphae (Plate I
f) and conidia formation (Plate I j) were observed.
After 5 days from inoculation, in the case of the samples with Pseudomonas
aeruginosa, the bacterial cells tended to adhere to the fungal hyphae (Plate I g and h), while
Bacillus licheniformis cells were agglomerated along the hyphae (Plate I k and i). The
bacterial pellicles included the fungal hyphae (Plate I i).
In the later stages of cocultivation with Alternaria alternata, both Bacillus
licheniformis and Pseudomonas aeruginosa strains seem to have direct contact with the
fungal hyphae, probably due to different antagonist mechanisms.
The ultrastructure of Alternaria alternata in interaction with antagonist strains
of bacilli and pseudomonads
Observations of the fungal cell ultrastructures, in the control sample, shown different
stages of life cycle from young hyphae and spores to mature hyphae, but mature forms of
conidia were not observed (Plate II a-e). The sections revealed a high density of spores and
hyphae, frequently agglomerated in variable disposals (Plate II a and b). The ultrastructure
of fungal cells displays the densely cytoplasmic contents with large quantity of storage
products such as lipids and vacuoles with distorted (irregular) forms (Plate II a and d). The
walls have a fibrous structure with two ill-defined layers with a granular electron-dense
substance concentrated in the outer region. The thickness of cell walls and deposition of
dark pigment, probably melanin on primary cell wall varied with the age.
The micrographs of control variants of the antifungal bacterial strains showed that
Pseudomonas strains released electron-dense material and vesicles of different size in the
extracellular medium (Plate II f). This material might be involved in the production of the
extracellular polymeric matrix of bacterial biofilm-like structures, such as pellicles in the
liquid media.
In dual cultures, the bacterial vesicular production was more intense, both in bacilli
and pseudomonads cocultures, although the presence of fungal hyphae was not observed in
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Mitoi, M.E. et al., 2012/ An. Stiint. Univ. Al. I. Cuza Iasi, Sect. II a. Biol. veget., 58, 2: 5-18
the sections (Plate II h). Most of bacteria, including Pseudomonas aeruginosa and more
species of bacilli, are able to form biofilm. This multicellular mode of growth predominates
in nature as a protective mechanism against hostile conditions (Walker et al., 2004).
Ultrastructural modifications of fungal cells at 3 days of cocultivation
In the case of cocultures with bacilli, most of the sections showed only fungal or
bacterial cells, this observation leading to the conclusion that bacterial population are
spatially separated from the fungal mycelium, a characteristic that has been observed in the
liquid medium as well. The fungal primary cell walls had an irregular shape (Plate III e)
with verruculose protuberances on the outer surface (Plate III c). Different sized vesicles
with fibrilar content are detached from these cell walls (Plate III a and b), as a possible
response to the bacterial action, in particular to the bacterial synthesis of lytic enzymes.
The agglomeration of bacterial cells around the fungal hyphae was observed when
the section crossed an area with both fungal and bacterial cells. The response of fungal cells
to the action of bacteria was different, depending on the bacterial species. When P14 strain
was used, most of the fungal cells appeared surrounded by a fibrilar layer exhibiting
different degrees of thickness (Plate IV a and b). This barrier layer between hyphae and
surrounding bacteria was disintegrated (Plate IV c) and most fungal cells presented a
detachment of the plasmalemma from the cell wall (Plate IV d and e). Other structural
modifications observed in the bacterial-fungal interaction were: the contraction of
cytoplasm (Plate IV f and g), secretion of extraprotoplasmic vesicles and degeneration of
membrane system (Plate IV g), phenomena characteristic for cell plasmolysis. In severe
cases, plasmalemma was disrupted and cytoplasm appeared to lose its structural
organization (Plate IV f). The presence of bacteria induces a premature senescence and
further autolysis and disorganization of hyphae cytoplasm, resulting in ghost cells empty of
content.
Ultrastructural modifications of fungal cells at 5 days of cocultivation
After 5 days of coculture, in the presence of the bacterial strain B40 mature conidia
with thick ornamented cell walls were detected (Plate III f and g). These thickened cell
walls were electron-dense, probably due to the melanin deposition. Moreover, in this
sample, fungal cells seemed to release large melanized particles, comparable with bacterial
cells dimensions (Plate III f).
In this stage of fungal cocultivation with mixed culture of Bacillus licheniformis
some hyphae and mature conidia showed a degraded cell content with membrane
shrinkage, irregular contour of cytoplasm, that included multiple vesicles (Plate III i and j).
Additionally, at 5 days, other changes were detected: spores and few vegetative hyphae
with more thickened cell wall (Fig 5 j and h), rare conidiophores in germination (Plate IV i)
and formation of endospores (Plate III e). These modifications suggest that in latter stages
of cocultivation the vegetative growth was inhibited and conidia development ceased both
in the presence of bacilli and pseudomonads.
Discussions
The selected bacterial strains, tested in our experiments, showed inhibitory activity
on a broad range of necrotrophic pathogens, including Alternaria alternata, Botrytis
cinerea, Pythium debaryanum and Fusarium oxysporum. Apparently, the two types of
bacteria have different mechanisms of action. Initially, Pseudomonas aeruginosa strains
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had a higher inhibitory activity, the growth of fungal mycelium being reduced, while the
antagonistic activity of Bacillus licheniformis was more stable in time.
Pseudomonas aeruginosa strains produced more diffusible compounds than Bacillus
licheniformis, restricting the mycelium development from the beginning. At the same time,
it is possible that B40 strain excreted active molecules with longer lifetime or with a
different mode of action, maintaining the inhibitory zone observed around the bacterial
colony. Recently, an antagonist lipopeptide was identified from culture filtrate of Bacillus
licheniformis BC98 (Tendulkar et al., 2007).
The release of fluorescent pigments by Pseudomonas aeruginosa strains varies with
antifungal activity, thus the culture media of P14 and P18 strains emitted a high
fluorescence, while P7 had a lower fluorescence signal. Based on the literature (O`Sullivan
and O`Gara, 1992), the yellow fluorescent color appears in the culture medium as a result
of pyoverdine production, which is a specific siderophore for fluorescent pseudomonads.
The iron starvation conditions determined by the excretion of these iron-binding ligands,
probably, prevent the germination of fungal spores.
The transmission electron microscopy micrographs showed that in the presence of
P14 strain, fungal cells were surrounded by many filaments and vesicles. The vesicles may
be secreted as a response of antagonistic reaction between the two partners. The
filamentous network on the outer surface of the cell wall could have a protective role
against bacteria or could be a result of destabilization in the cell wall structure. Thus, the
fungal cells which present a detachment of the plasmatic membrane have a diminished
filamentous network and bacterial cells are found much closer to the fungal cell wall. In the
control samples, this coat of fungal cell wall was not observed, thought in classical
utrastructural description of mature hyphae the walls are covered with a loose membranous
layer (Campbell, 1970).
A major change in the structure of fungal cells consisted of the degeneration of
membrane system. These results provide the idea that the active substances produced by
P14 strain affected the membrane system of the fungus similar with other fungi exposed to
synthetic fungicides (Youssef and Koblett, 1998). A common mode of action of these
diverse fungicides is the inhibition of ergosterol biosynthesis, a key sterol compound of
fungal plasma membranes. Localized alterations in plasma membrane organization, a
degenerated cytoplasm bordered by retracted plasma membrane were observed also in
hyphal tips exposed to 2,4- diacetylphloroglucinol (Souza et al., 2003), one of the most
studied compounds with antifungal activity produced by Pseudomonas spp.
In the presence of B40 strain, most of the fungal cells had very thick, heavily
melanized, ornamented cell walls, characteristic to mature conidia, suggesting that only in
this particular stage of the life cycle, the plant pathogen is resistant to bacteria. Cell walls of
numerous fungi are melanized, melanin protecting the pigmented cell from physical and
biological stress by forming a physical barrier between the cell and its surroundings.
Conidia of Alternaria alternata presented thicker cell walls produced by deposition
of fibrilar material encased in an electron-opaque layer. It was shown before that melanin
deposition occurs from the time of spore formation, in very last stages of maturation and
primary walls become progressively more electron-dense and completely opaque on the
outer surface (Campbell, 1969). From many years, significance of melanin in survival of
spores was appreciated, because these structures can be degraded without melanin
protection (Butler et al., 2001). In our case, the detachment of electron-dense particles or
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Mitoi, M.E. et al., 2012/ An. Stiint. Univ. Al. I. Cuza Iasi, Sect. II a. Biol. veget., 58, 2: 5-18
vesicles with fibrilar content from spore or hyphal cell wall could be a defensive
mechanism, but also the result of wall-degrading enzymes produced by B40 strain. The
melanins can protect fungal cell walls components against degradation by inhibition of lytic
enzymes as chitinases and glucanases. Also, the melanin may provide protection against
fungicide by its permeability barrier function or by sequestration of antifungal peptides
(Butler et al., 2001).
Most of the analyzed ultrathin sections showed that, in coculture with bacilli, the
bacterial and fungal cells were, in major part, spatially separated. However, the fungal cell
wall modifications were observed both in the areas where bacteria interact with fungi and in
the sections that present only fungal cells. The main conclusion that can be derived from
this observation is that bacteria do not necessarily need to be in direct contact with fungal
cells in order to induce modifications at cellular level.
Conclusions
Considering the observations mentioned above, we concluded that fungal cells react
different in the presence of the two types of bacterial strains. The main structural
modifications at the cell wall level were the apparition of protuberances, release of vesicles
or electron-dense particles, in the case of bacilli, while cocultivation with pseudomonads
determined the formation of fibrous layers on the outer surface of the fungi cells. Drastic
modifications, which can indicate a lytic effect of P14 antagonistic bacteria against fungi,
like plasmalemmal detachment, constriction of cytoplasm and degradation of membrane
system appeared quite often as well. Typical ultrastructural changes observed in fungi
exposed to fungicides were also detected in coculture with Bacillus licheniformis strains,
both in hyphal tips and mature conidia, but not very often. Probably these bacteria produce
a mixture of compounds with multiple mechanisms of action from inhibition of vegetative
growth to massive destruction and disorganization of fungal cells. Undergoing studies
approach the identification of genomic sequences in our bacilli and pseudomonads strains
responsible for the synthesis of antifungal compounds which are commonly produced by
bacteria from Bacillus and Pseudomonas genus.
Acknowledgments
This study was supported with funds from National Center of Programs Management
(CNMP), Ministry of Education and Research, Romania (CEEX 52/2006- BIOCOMB
project). We thank Brnzan A. and Stan V. for technical assistance.
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PLATE I. Squash analyses of Alternaria alternata and selected strains of Bacillus licheniformis or
Pseudomonas spp. cultures: (a) and (d) morphological aspects of hyphae in control variants; the aspect of bacilli
(b) and pseudomonads (c) in phase contrast microscopy; early stages in interactions between fungi and bacteria-
pseudomonads forming biofilms (e) and bacilli clustering among hyphae (f); in the latter stages of interaction the
pseudomonads adhere along hyphae (g and h) and bacteria biofilm invaded fungal hyphae (i), while bacilli
clustering around hyphae (k and l), but conidia germination was not inhibited (j). Scale bars = 100 m.
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PLATE II. Ultrastructural aspects of Alternaria alternata, Bacillus licheniformis and Pseudomonas
aeruginosa in control samples. Sections through hyphae and spores with different sizes and shapes (a-b),
longitudinal section (d) and cross section (c) by vegetative hyphae with cytoplasmic organelle densely packed,
large inclusion of the storage products (SB), irregular shape of vacuole (Va) and cell walls (CW) relatively smooth
and spore with thick cell walls and rough surface (e). Scale bars = 1 m. Bacterial liquid cultures of Pseudomonas
aeruginosa (f) and Bacillus licheniformis (g) show production of vesicular material (f- see arrows) and release of
large quantity of electron-dense material in dual cultures (h). Scale bars = 0.5 m.
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PLATE III. Transmission electron micrographs of Alternaria alternata fungal cells in interaction with
Bacillus licheniformis strains. (a-e): release of vesicles with fibrilar content from the conidia (a and b) and
hyphae (c) cell walls, detachment of the melanized granules from conidia cell walls (d and f- see arrows) and
irregular thickness of cell wall (e), mature conidia with corrugated, very thick and melanized cell walls (f and g),
the presence of endospore (h) and mature conidia and hyphae with constricted cytoplasm which contains multiple
vesicles (i and j). Scale bars = 1m.
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PLATE IV. Transmission electron micrographs of Alternaria alternata fungal cells in interaction with
Pseudomonas aerugiosa strains. Hyphae surrounded by bacteria, with a fibrilar network around the cell wall (a
and b), detached plasmalemma from the cell wall (d - see arrow and e) loss of fibrilar network (c-arrows and e),
shrinkage of cell content (c, f and g), degradation of membrane system (f and g), and secretion of
extraprotoplasmic vesicles (g- see arrow). Hyphae and conidia with thicker cell walls (h and j), cell almost
depleted of content (h and j) and rare conidiophores with abnormal germination (i). Scale bars = 1m.
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Table 1. Inhibitory activity of Bacillus licheniformis and Pseudomonas aeruginosa strains against different fungal phytopathogens
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