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Contents
1 Introduction
2 Some researches on soil organic matter conducted from 1975-1981 at the University of Aberdeen
3 The five humic-substance-defining characteristics identified by MacCarthy (2001)
4 Humic substances and water activity
5 An alternative climate change amelioration strategy
6 Fractionation of Humic Matter
6a Humic substances sequester agrochemicals including inorganic nutrients as well as environmental toxins
6b Classical fractionation: aqueous alkaline solution
6b-1 Non-Aqueous vs Aqueous Solvent Extraction of Humic Acids
6c Column fractionation
7 Humic Acids : Their Chemical Structures. Some Current and Previously-Held Views
7a Molecular Weight & Elemental Composition
7a-1 Anionic Functional Groups
7b The lignin hypothesis of humic matter
7c Fungal melanins and humic acids
7d Effect of oxidants, eg alkaline KMnO4 etc on humic substances
8 Formation of aromatics during pyrolysis of aliphatics
9 Humic Acids : Resistance to Biodegradation
10 Humic Acid Particles
11 Early Attempted Use of NMR to Study Humic Acids
12 Polymethylene Chains : Key Structural/Stabilisation Features of Humic Substances
12a Polymethylene in clay humic acid complexes
13 Alkyl phthalates in soil
14 Poly maleic anhydride model of humic substances
15 Use of UV absorption spectroscopy pyrolysis GLC-MS and infrared spectroscopy for the
characterisation of humic acids
16 [15N NMR]
17 References
1 Introduction
In the decades following the conclusion made by Schnitzer and Khan in 1972 that the chemical
structure of humic acids and related substances was largely unknown, there have been many attempt to
elucidate the chemical nature of these substances including, by the use of NMR (MAS) procedures
which should, in principle, have by now finally established the constitution of humic matter, but this
task is still commonly believed not yet to have been achieved (cf eg Loh et al 2004; Pena-Mendez et al
2005).
This problem of establishing the chemical structural nature of humic substances remains of
considerable theoretical and practical importance since humic substances are probably the most
abundant class of natural carbon-based polymers on earth, being an essential part of the mechanism of
plant nutrition (many essential ‘trace’ elements being bound by them) soil classification, structure and
stability, as well as being of interest for their roles in the formation of peat (brown) coal, natural waters
and mineral oil.
2 Some researches conducted on soil organic matter from 1975-1981 at the University of Aberdeen
suggested that good quality NMR spectra of humic substances {which could be obtained following the removal of paramagnetic
ions using detergent industry polyphosphate chelation methods but without which treatment a meaningful interpretation of the
spectra had been almost impossible} clearly showed that the traditional views of the nature of humic substances were incorrect.
The most obvious (most easily identified) widely distributed chemical structures present in humic substances seemed to be
polymethylene chains (cf Grant 1977). This finding had seemed to be fully in accord with the results of previous studies which
had been conducted in industrial laboratories which demonstrated that polyethylene was uniquely the most highly stable
chemical structure when placed into a soil environment. The most abundant material which co-occurred with polymethylene in
humic substances however produced NMR spectra indicating the presence of degraded polysaccharides.
Strategies for reducing atmospheric CO2 which are based exclusively on restriction of the combustion
of fossil fuels might be improved in effectiveness by the inclusion of inducements for the improvement
of soils by increasing their stable soil organic matter contents; this would obviously require a soil
organic matter-chemical-analysis- methodology directed towards the regulation of agricultural
activity so as to promote long-term carbon capture by the soil organic matter.
While the dominant current belief seems to be that the correct ethical behaviour of human society
should be to focus exclusively on reducing the combustion of fossil fuels in order to prevent the
supposed potentially adverse effects of excessive global warming attendant on inappropriate
augmentation of atmospheric CO2 levels, an alternative strategy could aim to prevent such warming by
the promotion on a global scale of the formation of stable soil organic matter sinks in soils, a task
which in principle at least could be achievable in a secure scientifically-based manner.
It is now suggested that protocols and legal frameworks which focus on augmentation of the easy-to-
measure- –(CH2)n- content of soils could provide for such a simple and effective method by which
human society can offset the augmentation of atmospheric CO2 arising from the burning of fossil fuel.
(It should also be noted that the polymethylene chain structures which apparently contribute the long-
term environmental stability of humic matter could also be the origin of petroleum).
6a Humic substances sequester agrochemicals including inorganic nutrients as well as environmental toxins
Humic substances are also important to the full understanding of the physics and chemistry of the
interactions between agrochemicals and soils.
This includes the sequestration of plant nutrients such as major and trace amount required inorganic
nutrient cations, nutrient anions including silicate, borate phosphate and nitrate, pesticides and
environmental toxins including potentially carcinogenic chlorinated substances during water
treatment, long-lived combustion-produced polyaromatic substances and incineration-of -municipal-
and-industrial-waste-produced polychlorinated and polybrominated aromatic substances.
Some fractions of humic matter also seem to act in a beneficial “hormone”-like manner to stimulate the
growth of plants; the fertility of soil must therefore be related to some extent to the abundance and
distribution of these particular kinds of humic substances.
Plant growth stimulation by humic acid preparations is difficult to assess the conflicting literature data
in this topic since the chemical nature of “humic acids” studies were not adequately characterised.
NaOH solutions are however the most widely used extractant for humic acids from soil, giving the
highest yields.
The relative efficiencies of common extractants of humic acids from soils have been reported as:
NaOH (0.1M) =100 (arbitrary units) [pyrophosphate] Na4P2O7 (0.5M) = 60.5, [oxalate] Na2C2O4 36.6
and NaF (0.1M) = 34.8 (Wilk 1961).
Pyrolysis studies have suggested that aqueous Na4P2O7 solution extracts more compact humic acids
having less side chains than are present in the humic acids from aqueous NaOH solution extracts (45).
The amount and type of extract obtained form different soils by formic acid-LiBr or acetone has been
suggested to be a convenient index of soil fertility (Eloff et al 1975)
Organic solvents may also be used as extractants for humic acids but these are generally less efficient
than aqueous inorganic reagent solutions, but may cause less structural alteration to the original humic
polymer molecules.
6b Column fractionation
Al2O3 gel and charcoal columns were employed by Vil’yams (1965) to separate the several ‘fulvic’
fractions (listed above), and by Forsyth (1946) to give four fractions. Two ‘fulvic’ acid sub-fractions
were distinguished by Tyurin (1968).
The employment of dextan gel filtration, thin layer chromatography or electrophoresis is apparently
only a little more successful (Ishiwatari, 1971; Tamai, 1971; Danneberg and Schaffer, 1974;
Cameron et al. 1972; Ladd , 1969; Butler and Ladd, 1969 and Banerjee, 1974) than the above
classical fractionation techniques in producing chemically differentiated fractions form soil organic
matter solutions, although molecular size distribution curves (‘fingerprints’) can be used for
characterisation purposes.
Classical subdivision of humus and the subdivision achieved by dextran gel filtration five differently
coloured fractions, in the former case the light absorption extinction coefficients increase with
decreasing solubility (and molecular weight) whereas in the latter case the extinction coefficient was
found to decrease with increasing molecular weight (Ladd, 1969).
7 Humic Acids : Their Chemical Structures. Some Current and Previously-Held Views
A current view is that humic acids are composed of
hydrophobic polymethylene subunit stabilised aggregates
largely held together by hydrogen bonding and a range of other non-covalent linkages (Piccolo, 2001
cf., Grant 1977d) but humic substances were previously widely believed to be derived from microbial
metabolites formed (BY HUMICFICATION) I.E. FERMENTAION FOLLOWED BY FURTHER BIOTIC AND ABIOTIC
DEGRADATION OF COMPLEXES WITH INORGANIC SPECIES FROM PLANT AND ANIMAL TISSUES BY MAINLY
INITIALLY BY A DIRECT MICROBIAL DEGRADATION;
PREVIOUS [NOW DISCREDITED THEORIES cf Susic 2001, 2003 ? but also cf eg Pema-Mendez et al 2005]
HAVE HELD THAT THE FORMATON OF LIGNIN-PROTEIN complexes were of importance in
humification (Waksman, 1938, cf, tanned protein, Handely, 1954) [suitable tannins were thought to be
provided by vegetable ‘polyphenol tannins’cf. Davies et al , (1964)].
Plant as well as microbial enzymes however might play some role in the formation of humic substances
by extracellular mechanisms.
Humic acids are probably the key types of polymer structure to be solved, the other named polymers
being variants of this basic type of compound. The term ‘humic’ acid is employed in the present text in
this more general sense (in common with the usage in much of the literature on the subject) rather than
as a particular subfraction of the total humic polymers.
Other preparations which have also been labelled as humic acids are produced by the action of
concentrated mineral acids on sugars (likely as a result of the promotion of
dehydration/oxidation/polymerisation reactions).
The formation of yet another type of synthetic “humic acid”-like polymers starting from phenols (or
quinones) had stimulated postulates of the formation of soil humic acids by this mechanism to give eg,
phenol-formaldehyde resin-like products; the initial phenols are envisaged as either being leached
from green leaves, resulting from microbial metabolites or the degradation of lignin. Ring opening
polymerisation of oxidised aromatic rings could also conceivably lead to humic acid-like polymers (cf
Ludemann et al (1973).
It might have been anticipated, a priori, however, that humic acids are random heterogeneous
aggregates of carbohydrates, microbial metabolites, degraded lipids and amino acids and contain both
mixtures and complexes, inorganic soil components and various organic polymers.
This view is now re-emerging, cf Piccolo (2001); Kelleher et al (2006).
However it had previously commonly considered (cf Burges (1960)) that the various fractions
produced by solvent extraction, as outlined above in Section 6, represent size fractionation of a singly
polymeric chemical substance or closely related chemical substances and furthermore that nitrogen is
probably not present in the primary polymeric backbone structure. This statement is based primarily
on the reproducibility of the properties and the difficulty of separation of identifiable compounds from
humic substances. Amino acids, amino sugars and phenols are considered to be adsorbed at the outer
surfaces or in pores of the main humic acid “core” polymer structure.
Seasonal variation in carbon (and nitrogen) contents of humic acids extracted from soils was found to
be much less than the variability of these elements in the soil as a whole, this providing evidence for a
relatively high degree of homogeneity and chemical integrity of humic acids [Zhigunov et al (1975),
Burges (1960)].
7a Molecular Weight & Elemental Composition
An ‘average’ humic acid was described by Felbeck (1971) as a polymeric substance (ie molecular
weight in the range 103-107) having C, 54; H, 5; O, 37 and N, 4%, however, purified humic acids from
different sites showed, in general, an unacceptably wide range of elementary composition for their
structure to be regarded as that of a polymeric chemical substances having regular repeating units.
The range of composition of humic acids, e.g., from 45 soils was found (Roszk, 1963)) to be C 43-62,
H 2.0-7.3, O 29.8-47.9 and N 3.1-6.5%.
A ‘pure’ form of ‘fulvic’ acid which had C, 50.92; H, 3.34; O, 44.74; N, 0.74 and S, 0.26%, was
investigated by Barton and Schnitzer (1963). Schnitzer (1972) observed that humic acids had C, 43-60,
H, 3.3-5.9 N 0.7-8.5 and S 0.3-1.7% whilst Kononova (1966) gave C, 45-62; H, 3.3-5.8 and N, 0.9-
6.0%.
In another study, a general classification was made based on sub-division of elemental analysis values
into C-rich and C-poor types, viz. 36-39%C and 40-43%C with further subdivision according to the
‘degree of oxidation’ of the humic acid (Orlov, (1970)).
‘Fulvic’ acids end to have greater % O, perhaps further preferentially located on the peripheries of the
macromolecules present and also had greater relative numbers of COOH groups, (cf Kasatochkin, et al
1964) than the humic acids.
The % ash in humic acids was found to be correlated by Konchits and Chernikov (1977) with the % O
values.
Water-soluble humic substances have often been reported to have especially high ash contents.
Humic acids are also supposed to show characteristic UV and infrared absorptions (cf Section 16 eg
Kononova, 1966).
Quite large variations have been reported in the amounts of the above functional groups. The presence
of COOH and salts COO-Mn+ groups is the most characteristic feature of humic substances as revealed
by conventional classical analysis (up to ca.100 mequiv/100g (Chen and Schnitzer, 1976 cf Butler and
Ladd, 1969; Hubler and Bloch 1975; Wilson and Weber, 1975); ca 1000mequiv/100g of COOH
groups have been found; 100 samples of humic acid of particle diameter <25nm had 525+
mequiv/100g COOH groups (Huber & Bloch, 1975).
In the classical work of Oden (1912) ‘fulvic ‘acid from peat was found to have an equiv. wt. of 335
(300mequiv/100g) and this suggested that it contained 3 COOH groups/molecule.
A large part of the cation exchange capacity (CEC) of soils is attributable to the functional groups of
humic acids and the stabilisation of humic colloids derives, in aqueous system, largely from the
ionisation of such groups, this providing negatively charged particles.
There is a continued debate on the existence of quinoid groups (Sevesu & Schnitzer (1977)) and the
relative amounts of aromatic structures in humic acids, one view is that the ‘core structure’ of humic
acids most characteristically is a condensed polynuclear aromatic ring system. Reductive degradation,
eg by Na amalgam yielded significant amounts of polynuclear aromatic hydrocarbons which was
thought to confirm the existence of major amounts of aromatic structures in humic acids.
These structures could, however have alternatively arisen from rearrangements of polyketide derived
linear structure of microbial metabolites, e.g. structures of a similar nature to macrolide antibiotics.
During the main treatments of soil organic matter many chemical changes may occur. Alkaline
extractants exhibit the greatest alteration effects as indicated by increased unpaired electron spins
detected by ESR (Hayesetal, Schnitzer & Desjardins, 1962). It is likely, furthermore, that the chemical
analysis methods thought to indicate the presence of aromaticity previously employed in humic
substance research, (empiricial light absorption and rate of pyrolysis data) which had also included
attempts to use X-ray diffraction to detect polyaromatic structures and their variation between soil
types (chernozems appeared to contain more of such structures than podzols; the ‘core’ held
predominantly aliphatic side chains (Kasatochkinetal, 1964) )may have greatly overestimated the
amounts of such of aromatic carbons present; eg, a specially purified fulvic acid which had been
extensively studied by Schnitzer and colleagues had been believed to contain 61% of its nuclear carbon
in aromatic structures although there was no aromatic absorptions indicated in the 1H NMR spectrum
(Schnitzer & Skinner, 1968).
The formation of abundant amounts aromatic structures is known to occur during the incineration of
organic matter. An well-known example of the type of aliphatic-aromatic conversion process is the
conversion of polyvinyl chloride to a scrambled range of polyhalogenated aromatic substances during
the incineration of municipal and domestic waste (cf eg Choudhry and Hutzinger 1983), a phenomenon
which may also occur starting from any kind of starting organic substance incinerated in the presence
of inorganic chloride and transition metals indicates the existence of general principles where
pseudoequilibria are set up between aliphatic and aromatic moieties. [General theories of such
processes while developed many years ago in industrial laboratories are still valid; such
mathematical
models include stochasitc structural rearrangement theories of (cf eg Van Wazer (1962)) apply also to
the pseudoequilbrium situations occurring e.g. during the pyrolysis of hydrocarbons prior to the
separation of char/soot. In an analogous manner complex aromatic structures might be envisaged to
be readily formed from aliphatic humic matter during forest fires or equivalent geological processes
which give rise to the formation of coal. .
The occurrence of aromatics in common type of core structure in different humic acids sampled from a
range of soils throughout the world (including the structures which resist alkaline KMnO3 degradation
to the greatest extent) suggests that operation of a thermodynamic driven (pseudo)equilibrium process
eg catalysed by transition metals. This concept would be expected to include a series humic acid—
lignite—coal. However this idea does not easily fit in with the NMR spectra.
9 Humic Acids : Resistance to Biodegradation
Humic acids possess considerable resistance to further decomposition under soil conditions, carbon
residence times of 104 years being possible (Otsuka (1975)); such stability does not by itself give
direct evidence for the kinds of chemical structures which are present in humic matter, since many
sparingly water-soluble compounds possess a high degree of stability towards biodegradation. The
various properties which were considered to make humic acids resistant to biodegradation were listed
by Swaby (1968) as: unusual chemical bonds, steric–hindrance, high molecular weight, globular
shape, smooth topography, surface charge, disoriented polymer and copolymer structure and the
presence of cross linkages.
Graphite (from the pyrolysis of wood) was found to be degraded efficiently in the soil (Schneour
(1966)). This suggests that polycondensed aromatic ring systems such as were postulated to occur in
humic acids do not necessarily confer biological stability as might have been supposed. The presence
of disordered sp3 hybridised carbon networks (eg adamantane-like structures (cf Chakrabartty et al.,
1974) appears equally likely in humic acids of high carbon content.
Of further possible significance is the presence of structures with antibiotic properties in the humic
substances (cf the addition to soil of metal humates has been found to retard (but not prevent) the
degradation of humic anions or added glucose by microorganisms (Juste et al 1975).
The density of humic acids, determined by flotation, were in the range 1.4-1.7 (Orlov et al 1972b)
(this seems to be in accord with the presence of inorganic constituents within the particles).
Ultracentrifugation studies (Flaig et al 1968) and conventional viscosity studies (Flaig 1969) also
suggested that humic acids resembled aqueous hyroxyl-oxyacid (inorganic) polymer colloidal systems.
Humic acid particle densities of were suggested in one study to increase with the “degree of
humification” (Orlov et al 1965) (Bambalov 1973).
Aggregates of the primary particles of humic acid (MW = ca 103) are evidently formed in aqueous
systems, this phenomenon being pH dependent.
(‘Fulvic’ acids may, however, be less susceptible to aggregation than are the other ‘humic’ acids) (cf.
Komissarov and Loginov, (1971) and Sipos et al, (1972)).
[Podzol and black earth humic substances showed various aliphatic and aromatic structures with the
latter apparently predominating in the podzol but the former in the black earth. However in the podzol
spectrum there was superposition of the HO and organic H-C absorption making assignments difficult.
In the 1977 work, podzols were studied further, the spectra being much improved and indicating the
predominance of aliphatic structures. The amounts of aromatic structures estimated by these authors
were almost certainly too high since they appear to have included a very broad absorption attributable
to colloidal HO or H-C-O (general environments) in their supposed aromatic absorption.
Synthetic humic acids derived from the oxidation of p-catechol appeared to be predominantly aliphatic
in nature indicting the occurrence of ring opening polymerisation during their formation].
Oka et al (1969) reported NMR evidence for carbohydrate-like and also lactone rings (attributed to the
occurrence of lignin-like structures) and well defined, but relatively minor amounts, of aromatic groups
in peat humic acids.
Ishiwatarti (1973) assigned major NMR resonances of lacustrine humic acids to alicyclic structures
[but indicative of the presence of (CH2)n chains].
Humic acids derived from river water and hymatomelanic acids from soil were reported (Reuter et al.
1972) to show the presence of polyketide structure (the alternative assignment as aromatic groups
seems less likely) with an additional association of (CH2)n chains.
Scciacovelli et al (1977) obtained high quality 1H NMR spectra from primary extraction of a Sardinian
soil with a series of ten solvents of increasing polarity followed by redissolution
in deuterated solvents. This report in agreement with agreed with previous work showed that only ca.
10% of the organic matter in the Sardinian soil was extracted in this manner; the organic matter
extracted with dioxane and EtOH apparently contained hydoquinone groups. The characteristic NMR
resonance attributable to (CH2)n groups was present in all extracts.
The (CH2)n structures in humic acids may derive from (oxidative) degradation of lipids in micro-
organisms by analogy with the drying oil oxidative polymerisation.
A microbial “humic acid” obtained from Aspergillus flavus culture appeared to contain a large amount
of such material (Visser (1970).
A further source of (CH2)n structures is from aphic wax which has been found to be long-term stable
component of peat.
It should also be noted that man-made synthetic (CH2)n is very stable under soil conditions when n>30.
High density, linear polyethylene will resist degradation in soil environments over many years and
articles made from linear polyethylene will probably still be useable after many thousands of years.
(On the other hand polyolefins which contain branched hydrocarbon structures such as isotactic
polypropylene is intrinsically unstable in an aerobic environment).
Commercial articles fabricated from plastics other than linear polyethylene have lifetimes which
depends entirely on the presence of added antioxidants: a dramatic illustration of this is that highly pure
samples of test mouldings made from highly isotactic polypropylene which contained the standard
amounts of small amounts of hindered phenolic + iron chelator was unaltered over one year at 20C
(when stored in the dark under atmospheric conditions) but an identical test piece moulding of identical
resin which had been fabricated without the antioxidant mixture had become totally degraded to a
powder state under the same conditions over this time).
The above experiment is a useful if highly simplified model of how “humic material” might be
produced by a purely abiotic process by exposure to air. Whilst the intrinsically stable chemical
structures exemplified by (CH2)n where n>30 will remain largely un-degraded, most other biological
molecules are intrinsically unstable in an aerobic environment and remain intact only until the
associated antioxidant system (e.g. lignin) becomes exhausted (by a process in which the reactive
oxygen and nitrogen radicals for which it acts as a spin trap eventually degrade it, this is expected to
occur at a similar rate to those observed for man-made hindered phenolic mimics of this natural
antioxidant system).
Although the NMR spectra of humic acids from different sources reveal the presence of numerous
chemically different structures and the first NMR studies of humic substances suggested that the
spectrum was dominated by the (CH2)n –related resonances, infrared and mass spectrosocpic evidence
however also seemed to show some aromatic structures to be present.
Sephadex gel filtration of an original (methylated ) humic acid provided fractions having similar
spectra.
It is of interest to use the published elementary composition and the 1H NMR –indicated structure
analysis to obtain an estimate of any carbon-rich structure present which do not contribute to 1-H NMR
spectra). Whilst all of the fractions, on the basis of elemental analysis seemed to be aggregates of a
C15H20O9 unit, the NMR spectra suggested Cn (CH2)10CH3. The Cn might contain aromatic rings or
adamantane-like structures fully substituted by OH or COOH.
In general, 13C NMR suggested the occurrence of relatively minor amounts of genuine aromatic
structures in most humic acids and the relative scarcity of possible aromatic H-C resonances suggests
that aromatic structures are much less abundant in humic substances than was originally believed.
Soil organic matter and humic acids generally show some enzymic activity which indicates the
existence of protein-like fragments bound to the humic acid surfaces (such adsorption may stabilise the
adsorbed enzymes against microbial degradation).
It is possible to reduce the N content of humic acid by mineral acid (e.g. 6M HCl) hydrolysis. This
procedure was found to remove amino acids and amino sugars.
[15N NMR]
The presence of small amounts of nitrate attached to humic acid was indicated (Xu et al 2002) to be a
potentially useful indicator of the quality of forest soil; these authors also reported the presence of
small amounts of heterocyclic N in humic matter.
References
Historical Document References plus additional more recent references (in italic).
Some of the historical references which shed light on the history of humic substance research are not
specifically cited in the text
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[It is argued that it now apparent that the traditional concepts of the
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