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No pollution.
No disease.
AUG 2015 I
Andtheend
of life as
we know it.
Editing DNA is now
as easy as cut and paste.
Welcome to the
post-natural world.
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by Amy
Maxmen
At the end of the meeting, Baltimore and war over the basic patent. Depending on ments did, but they knew they were weird.
four other molecular biologists stayed up what kind of person you are, Crispr makes In a branding exercise only scientists could
all night writing a consensus statement. you see a gleaming world of the future, a love, they named these clusters of repeat-
They laid out ways to isolate potentially No bel medallion, or dollar signs. ing palindromes Crispr.
dangerous experiments and determined The technique is revolutionary, and like Then, in 2005, a microbiologist named
Spiny grass and scraggly pines creep thatcloningorotherwisemessingwithdan- all revolutions, it's perilous. Crispr goes well Rodolphe Barrangou, working at a Dan- Scientists have used it
amid the arts-and-crafts buildings of the gerous pathogens should be off-limits. A few beyond anything the Asilomar conference ish food company called Danisco, spotted
Asilomar Conference Grounds, 100 acres attendees fretted about the idea of modifi- discussed. It could at last allow genetics some of those same palindromic repeats to render wheat i'LIIU;tiiYie
of dune where California's Monterey
Peninsula hammerheads into the Pacific.
It's a rugged landscape, designed to inspire
cations of the human "germ line" -changes
that would be passed on from one genera-
tion to the next-but mostthoughtthatwas
researchers to conjure everything anyone
has ever worried they would- designer
babies, invasive mutants, species-specific
in Streptococcus thermophilus, the bacte-
ria that the company uses to make yogurt
and cheese. Barrangou and his colleagues
W ,S'jt ':1f..IJSue crops
billions of people.
people to contemplate their evolving place so far off as to be unrealistic. Engineering bioweapons, and a dozen other apocalyp- discovered that the unidentified stretches
on Earth. So it was natural that 140 scien- microbes was hard enough. The rules the tic sci-fi tropes. It brings with it all-new of DNA between Crispr's palindromes
tists gathered here in 1975 for an unprec- Asilomar scientists hoped biology would rules for the practice of research in the life matched sequences from viruses that had
edented conference. follow didn't look much further ahead than sciences. But no one knows what the rules infected theirS. thermophilus colonies. Like
They were worried about what people ideas and proposals already on their desks. are-or who will be the first to break them. most living things, bacteri~ get attacked by
called "recombinant DNA," the manipula- Earlier this year, Baltimore joined 17 viruses-in this case they're called bacte-
tion of the source code of life. It had been other researchers for another California In a way, humans were genetic engineers riophages, or phages for short. Barrangou's
just 22 years since James Watson, Francis conference, this one at the Carneros Inn in long before anyone knew what a gene was. team went on to show that the segments
Crick, and Rosalind Franklin described Napa Valley. "It was a feeling of deja vu,'' They could give living things new traits- served an important role in the bacteria's
what DNA was-deoxyribonucleic acid, Baltimore says. There he was again, gath- sweeter kernels of corn, flatter bulldog defense against the phages, a sort of immu-
four different structures called bases stuck ered with some of the smartest scientists faces-through selective breeding. But it nological memory. If a phage infected a
to a backbone of sugar and phosphate, in on earth to talk about the implications of took time, and it didn't always pan out. By microbe whose Crispr carried its finger-
sequences thousands of bases long. DNA genome engineering. the 1930s refining nature got faster. Sci- print, the bacteria could recognize the
is what genes are made of, and genes are The stakes, however, have changed. entists bombarded seeds and insect eggs phage and fight back. Barrangou and his
the basis of heredity. Everyone at the Napa meeting had access to with x-rays, causing mutations to scatter colleagues realized they could save their
Preeminent genetic researchers like a gene-editing technique called Crispr-Cas9. through genomes like shrapnel. If one of company some money by selecting S. ther-
David Baltimore, then at MlT, went to Asi- The first term is an acronym for "clustered hundreds of irradiated plants or insects mophilus species with Crispr sequences
lomar to grapple with the implications of regularly interspaced short palindromic grew up with the traits scientists desired, that resisted common dairy viruses.
being able to decrypt and reorder genes. repeats," a description of the genetic basis they bred it and tossed the rest. That's As more researchers sequenced more
It was a God-like power-to plug genes of the method; Cas9 is the name of a protein where red grapefruits came from, and most bacteria, they found Crisprs again and
from one living thing into another. Used that makes it work. Technical details aside, barley for modern beer. again-half of all bacteria had them. Most
wisely, it had the potential to save millions Crispr-Cas9 makes it easy, cheap, and fast Genome modification has become less Archaea did too. And even stranger, some
oflives. But the scientists also knew their to move genes around-any genes, in any of a crapshoot. In 2002, molecular biolo- of Crispr's sequences didn' t encode t he
creations might slip out of their control. living thing, from bacteria to people. "These gists learned to delete or replace specific eventual manufacture of a protein, as is
They wanted to consider what ought to are monumental moments in the history genes using enzymes called zinc-finger typical of a gene, but instead led to RNA-
be off-limits. of biomedical research," Baltimore says. nucleases; the next-generation technique single-stranded genetic material. (DNA, of
By 1975, other fields of science-like "They don't happen every day." used enzymes named TALENs. course, is double-stranded.)
physics-were subject to broad restric- Using the three-year-old technique, Yet the procedures were expensive and That pointed to a new hypothesis. Most'
tions. Hardly anyone was allowed to work researchers have already reversed muta- complicated. They only worked on organ- present-day animals and plants defend
on atomic bombs, say. But biology was dif- tions that cause blindness, stopped can- isms whose molecular innar ds had been themselves against viruses with structures
ferent. Biologists still let the winding road cer cells from multiplying, and made cells thoroughly dissected-like mice or fruit made out of RNA. So a few researchers
of research guide their steps. On occasion, impervious to the virus that causes AIDS. flies. Genome engineers went on the hunt started to wonder if Crispr was a primor-
regulatory bodies had acted retrospec- Agronomists have rendered wheat invul- for something better. dial immune system. Among the people
tively- after Nuremberg, Tuskegee, and nerable to killer fungi like powdery mildew, As it happened, the people who found working on that idea was Jill Banfield, a
the human radiation experiments, external hinting at engineered staple crops that can it weren't genome engineers at all. They geomicrobiologist at UC Berkeley, who
enforcement entities had told biologists they feed a population of 9 billion on an ever- were basic researchers, trying to unravel had found Crispr sequences in microbes
weren't allowed to do that bad thing again. warmer planet. Bioengineers have used the origin of life by sequencingthe genomes she collected from acidic, no-degree water
Asilomar, though, was about establishing Crispr to alter the DNA of yeast so that it of ancient bacteria and microbes called from the defunct Iron Mountain Mine in
prospective guidelines, a remarkably open consumes plant matter and excretes etha- Archaea (as in archaic), descendants of the Shasta County, California. But to figure out
and forward-thinking move. nol, promising an end to reliance on petro- first life on Earth. Deep amid the bases, the if she was right, she needed help.
chemicals. Startups devoted to Crispr have As, Ts, Gs, and Cs that made up those DNA Luckily, one of the country's best-known
launched. International pharmaceutical sequences, microbiologists noticed recur- RNA experts, a biochemist named Jenni-
and agricultural companies have spun up ring segments that were the same back to fer Doudna, worked on the other side of
I Ill
Ill
I'll
Crispr R&D. Two of the most powerful uni-
versities in the US are engaged in a vicious
front and front to back- palindromes. The
researchers didn't know what these seg-
campus in an office with a view of the Bay
and San Francisco's skyline. It certainly
wasn't what Doucina had imagined for her-
self as a girl growing up on the Big Island of
Hawaii. She simply liked math and chem-
istry-an affinity that took her to Harvard
and then to a postdoc at the University of
Colorado. That's where she made her ini-
segments like a genetic GPS. And when the
Crispr-Cas9 complex arrives at its destina-
tion, Cas9 does something almost magical:
It changes shape, grasping the DNA and
slicing it with a precise molecular scalpel.
Here's what's important: Once they'd
That kind of seriousness is typical for
Zhang. At 11, he moved from China to Des
Moines, Iowa, with his parents, who are
engineers-one computer, one electrical.
When he was 16, he got an internship at the
gene therapy research institute at Iowa
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research tools, such as cancerous mice- government said it wouldn't fund research
perfect for testing new chemotherapies. on human embryonic stem cells, private
A team at MIT, working with Zhang, used entities raised millions of dollars to do
Crispr-Cas9 to create, in just weeks, mice it themselves.) Engineered humans are a
that inevitably get liver cancer. That kind ways off-but nobody thinks they're sci-
of thing used to take more than a year. ence fiction anymore.
Other groups are working on ways to test Even if scientists never try to design a
drugs on cells with single-gene variations baby, the worries those Asilomar attend-
to understand why the drugs work in some ees had four decades ago now seem even
cases and fail in others. Zhang's lab used more prescient. The world has changed.
the technique to learn which genetic vari- "Genome editing started with just a few big
Chinese researchers tried to skirt the eth- ations make people resistant to a mela- labs putting in lots of effort, trying some-
ical implications of their work by using noma drug called Vemurafenib. The genes thing 1,000 times for one or two successes,"
nonviable embryos, which is to say they he identified may provide research targets says Hank Greely, a bioethicist at Stanford.
could never have been brought to term. for drug developers. "Now it's something that someone with a
But the work attracted attention. A month The real money is in human therapeutics. BS and a couple thousand dollars' worth of
later, the US National Academy of Sciences For example, labs are working on the genet- equipment can do. What was impractical
announced that it would create a set of ics of so-called elite controllers, people is now almost everyday. That's a big deal."
recommendations for scientists, policy- who can be HIV-positive but never develop In 1975 no one was asking whether a
makers, and regulatory agencies on when, AIDS. Using Crispr, researchers can knock genetically modified vegetable should be
if ever, embryonic engineering might be out a gene called CCRS, which makes a pro- welcome in the produce aisle. No one was
permissible. Another National Academy tein that helps usher HIV into cells. You'd able to test the genes of an unborn baby,
report will focus on gene drives. Though essentially make someone an elite control- or sequence them all. Today swarms of
those recommendations don't carry the ler. Or you could use Crispr to target HIV investors are racing to bring genetically
weight oflaw, federal funding in part deter- directly; that begins to look a lot like a cure.- engineered creations to market. The idea
mines what science gets done, and agen- Or- and this idea is decades away from of Crispr slides almost frictionlessly into
cies that fund research around the world execution-you could figure out which modem culture.
often abide by the academy's guidelines. genes make humans susceptible to HIV In an odd reversal, it's the scientists who
overall. Make sure they don't serve other, are showing more fear than the civilians.
The t ruth is, most of what scientists want more vital purposes, and then "fix" them in When I ask Church for his most nightmar-
to do with Crispr is not controversial. For an embryo. It'd grow into a person immune ish Crispr scenario, he mutters something
example, researchers once had no way to to the virus. about weapons and then stops short. He
figure out why spiders have the same gene But straight-out editing of a human says he hopes to take the specifics of the
that determines the pattern of veins in the embryo sets off all sorts of alarms, both idea, whatever it is, to his grave. But thou-
wings of flies. You could sequence the spi- in terms of ethics and legality. It contra- sands of other scientists are working on
der and see that the "wing gene" was in venes the policies of the US National Insti- Crispr. Not all of them will be as cautious.
its genome, but all you'd know was that tutes of Health, and in spirit at least runs "You can't stop science from progress-
it certainly wasn't designing wings. Now, counter to the United Nations' Universal ing," Jinek says. "Science is what it is."
with less than $100, an ordinary arachnol- Declaration on the Human Genome and He's right. Science gives people power.
ogist can snip the wing gene out of a spider Human Rights. (Of course, when the US And power is unpredictable. I!!J
embryo and see what happens when that
spider matures. If it's obvious- maybe its
claws fail to form - you've learned that
the wing gene must have served a differ-
ent purpose before insects branched off,
evolutionarily, from the ancestor they Researchers in China
shared with spiders. Pick your creature,
pick your gene, and you can bet someone announced they
somewhere is giving it a go.
Academic and pharmaceutical company
had used Crisprto sns:
labs have begun to develop Crispr-based
EJ M atthew Monteith
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AUG 2015
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