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Phytochem Rev (2015) 14:299315

DOI 10.1007/s11101-014-9367-z

The pharmaceutical industry and natural products:


historical status and new trends
Bruno David Jean-Luc Wolfender

Daniel A. Dias

Received: 23 March 2014 / Accepted: 27 May 2014 / Published online: 3 June 2014
Springer Science+Business Media Dordrecht 2014

Abstract Owing to the high diversity of terrestrial a reputable source of current drugs on the market.
and marine organisms, natural products (secondary Meanwhile, the World Health Organization has come
metabolites) are some of the most successful source of to the realisation of the importance of biodiversity
drug leads for the treatment of many diseases and which would be able to offer affordable, therapeutic
illnesses. In the 1990s, advancements in automation solutions to the majority of the world population. The
[high-throughput screening (HTS)] and isolation preservation of the worlds biodiversity and its access
technologies resulted in the surge in research towards is a critical issue which could hamper a serene
natural products both in the fields of human health and utilisation of natural products in the developing world
agriculture. These strategies and techniques generated with herbal-based phytopharmaceuticals representing
a substantial shift towards this green Eldorado, a real a significant share of the total world pharmaceutical
Green Rush between 1990 and 2000. However, in the market. This review presents an industrial perspective
early 2000s most of the big Pharmas terminated their discussing natural product drug discovery, lead
HTS and bioprospecting endeavours but to date, the research, botanicals, pro-drugs, synergy effects, drugs
low productivity of combichem and rational drug interactions with botanicals, traditional medicines,
design is silently positioning pharmacognosy back on reverse pharmacognosy and presents the difficulties in
the rails and natural product discovery is remerging as accessing biodiversity.

B. David Keywords Drug discovery  High-throughput


Pole Actifs Vegetaux - Branche Sourcing R&D et screening (HTS)  Biodiversity  Pharmaceutical
Botanique, Institut de Recherche Pierre FABRE, 3, industry  Access and benefit sharing
Avenue Hubert Curien - BP 13562, 31562 Toulouse,
Cedex, France

J.-L. Wolfender (&)


Phytochemistry and Bioactive Natural Products, School of Introduction
Pharmaceutical Sciences, University of Geneva and
University of Lausanne, Quai Ernest-Ansermet 30,
CH-1211 Geneva, Switzerland Natural products (NPs), commonly referred to as
e-mail: Jean-Luc.Wolfender@unige.ch secondary metabolites (the end-products of gene-
expression) are an essential, reputable source of
D. A. Dias
successful drug leads which originate from Earths
Metabolomics Australia, School of Botany,
The University of Melbourne, Parkville, bio-diverse flora and fauna. Since more than 95 % of
Victoria 3010, Australia the worlds biodiversity has not been evaluated

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(known biodiversity is estimated at 2 million species Pacific Yew, Taxus brevifolia (Dewick 2009) and
of plants, animals, fungi and micro-organisms and trabectedin (3) (Yondelis) isolated from the sea
alike) for any biological activity, the challenge is how squirt, Ecteinascidia turbinata (currently completing
to efficiently and effectively access and valorise this Phase III studies in the US) (Cuevas and Francesch
natural chemical diversity (Colegate and Molyneux 2009; Cragg and Newman 2013) which provided the
2008; Dewick 2009; Mishra and Tiwari 2011). first marine anticancer drug to be approved in Europe
Undoubtedly, natural products have been produced, after cytarabine (4) (1969) (Mayer et al. 2010).
as a result of millions of years of evolution of Mevastatin (5) produced by Penicillium citrinum led
terrestrial and marine organisms adapting to various to synthetic statins exemplified by atorvastatin (6)
abiotic and biotic stresses. They are therefore encoded which is the best-selling blockbuster drug in Pharma
to be bioactive; for ages they have been used as history. The class of drugs known as the statins,
medicines and today, they continue to be a reservoir of which lower cholesterol levels are frequently used as
potential drugs (Lamottke et al. 2011). everyday medication (Verpoorte et al. 2005) and in
The oldest records for the usage of medicinal plants some countries there is a shift towards purchasing this
dates back to 2400 B.C. on clay tablets (Mesopota- kind of medicine without prescription. Several other
mia), (Attinger 2008) 1534 B.C.; the Ebers Papyrus NPs or NP-derived drugs including ziconotide (7)
(9th year of Amenhotep 1 reign), and the Chinese (conopeptide), exenatide (8) (oligopeptide) and ixab-
Materia Medica, document written by Li Shizhen in epilone (9) (epothilone derivative) are other examples
1578 (Zheng 1988). From, *300 B.C. (Theophrastus) of current FDA approved drugs (Data available at
who dealt with medicinal herbs to the isolation of http://www.accessdata.fda.gov). In this review we
morphine around 1804 by Serturner (Serturner 1817), wish to discuss new trends, the future of natural pro-
NPs have been the forefront of medicine to treat ducts (as single-molecule entities and botanical
human disease (Dias et al. 2012). With the advance- extracts) from a Pharmaceutical Industry perspective.
ments in the field of chemistry at the dawn of the Cragg and Newman have extensively reviewed
nineteenth century, plants were examined vigilantly to NPs, semi-synthetic NPs and nature inspired mole-
fathom their therapeutic potential (Beutler 2009). cules which are currently approved by the Food and
Historically, apothecaries and then pharmaceutical Drug Administration (FDA) (Cragg et al. 1997;
companies utilized plant extracts to produce relatively Newman et al. 2003; Newman and Cragg 2007;
crude therapeutic formulations. In the mid-twentieth Newman 2008; Cragg and Newman 2013). In a recent
century, drug formulations of partly purified NPs review, Newman and Cragg have shown that 34 % of
became typical prior to single molecule medicines current drugs (where N = unmodified NP, 6 %;
(Mishra and Tiwari 2011). Following the discovery of NB = a NP botanical and ND = a modified NP,
the well-known antibiotic, penicillin (1) (Fig. 1), 28 %) are NP inspired or derived. Sixty-six percent
many drug breakthroughs from microbial sources (where S*/N = a synthetic compound with a NP
occurred and with the advances in diving techniques pharmacophore, 11 %; S* = a synthetic compound
(improved SCUBA technologies) in the 1970s, sub- with a NP pharmacophore, 5 %; S/NM = a synthetic
sequently opened the ocean as an overlooked source of compound showing competitive inhibition of the
NPs (Blunt et al. 2011). Chemical synthesis, shifted natural product substrate, 14 % and S = a synthetic
the focus of drug discovery efforts from nature to the compound with no natural product conception, 36 %)
laboratory bench in the late 1980s (Cragg and of NPs, NP inspired in the form of semi-synthetic/
Newman 2013). Of the 1,135 new drugs approved modified drug are the basis of current drugs on the
from 1981 to 2010, 50 % were of NP origin (natural, market (Cragg and Newman 2013). In a study by
derivatives and analogues) (Cragg 2007; Schmitt et al. Koehn and co-authors, they examined the worldwide
2011; Newman and Cragg 2012) with most of the patent trends between 1984 and 2003 in NP discovery
chemical diversity nearly or completely absent from (Koehn and Carter 2005). According to the authors
current small molecule-based screening libraries pro- statistics, there was a period of increasing patent
vided by combichem (Bauer et al. 2010). Well known activity through the 1980s (as the investigation of NPs
examples include the widely used breast cancer drug, as sources of drugs reached its peak in the Western
paclitaxel (2) (Taxol), isolated from the bark of the pharmaceutical industry), a slight decline from 1990 to

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Phytochem Rev (2015) 14:299315 301

1999 and an increase in activity between 2000 and Why did many of the Big Pharmas terminate their
2003 (Koehn and Carter 2005). Certainly, there are natural product programs?
numerous NPs that have been patented however
patenting would be required prior to publication and There is evidence to suggest that there has been a
potential usage. significant decrease in the number of approved drugs
by the FDA over the last 20 years (originally 45
approved in 1990 to 21 in 2010) (Kingston 2011). To
NP research at the industry level date, pharmaceutical companies are under scrutiny
due to the gradual decline and pressure to increase the
Worldwide pharmaceutical R&D spending, increased number of new drugs on the market, and as a result in
from US $10 billion to US $30 billion over the same the last decade, many pharmaceutical companies have
period, however the overall trend in the 1990s abandoned their natural product drug discovery pro-
showed a gradual decline (Koehn and Carter 2005). grams (Table 1) (Dickson and Gagnon 2004; McChes-
In a study by Butler and co-workers they documented ney et al. 2007). Reasons for this included: lead
that 34 NP-based drugs were launched between 1998 compounds are available only in extremely small
and 2007, (Butler 2005; McWilliams 2006) with six quantities, difficulties in sourcing/harvesting samples,
of them based on lead compounds from plants or extensive synthetic routes and development times
marine macro-organisms. Thirty-six plant-derived resulting in poor yields, impracticality of scale-up,
compounds and 10 marine-derived compounds were difficulties in the isolation and/or purification proce-
in oncology clinical trials which were derivatives of dures, high toxicity of the active compound, ecolog-
31 different lead NPs. However, in the last 25 years, ical and legal considerations, government policies,
of the 877 novel medicines developed between 1981 lack of infrastructure and insufficient capital invest-
and 2002, 6 % were NPs and 27 % were NP ment (Paterson and Anderson 2005; Bhatnagar and Se-
derivatives indicating that they play an important Kwon 2010; Lamottke et al. 2011; Thomas and
source of novel leads for the production of therapeu- Johannes 2011). Companies including, Bristol Myers
tic drugs (Newman et al. 2003; Yuliana et al. 2011). Squibb, Merck, Johnson and Johnson, Pfizer, Glaxo-
A different set of statistics was provided by Harvey SmithKline gradually terminated or no longer main-
and co-authors, which included data on drugs based tained their screening programs whilst others, such as
on NPs from pre-clinical development through to Novartis have continued their programs. Most NP
pre-registration. One-hundred and eight plant-derived discovery programs are confined to academic research
compounds, 24 animal (primarily marine) com- within universities and start-ups (Ortholand and
pounds, and 61 semisynthetic compounds out of Ganesan 2004; Beutler 2009) mainly focusing on
225 NPs were in development (Harvey 2008; microorganisms (Sheridan 2012). The list of such
Kingston 2011). A total of 26 plant-based drugs companies is quoted by Sheridan.
were approved/launched during 20002006 (Saklani Though there are some well-known examples of
and Kutty 2008). Even though there are numerous NP derived compounds which have made it through
examples of NPs that have reached the market, NP the arduous drug discovery process it is important
extracts (botanicals or phyto-pharmaceuticals) also to mention those that have failed. Rifalazil (10)
play an essential role in therapy (examples will be was evaluated by ActivBiotics, and failed in a
discussed later in this review). The current market is Phase III trial for the treatment of the intermittent
expanding as we are now seeking natural, traditional claudication associated with peripheral arterial
medicines which are available at relative low costs disease (Mishra and Tiwari 2011). Contulakin G
(Lawson 2013). Botanical therapeutics can be sold in (11) (marine cone snail) was an orphan drug,
the form of dietary supplements, drugs, or botanical designated lead of Cognetix that had completed
drugs (Schmidt et al. 2008) and can eventually hold Phase Ib clinical trials against chronic and intrac-
the status of current registered pharmaceuticals table pains but was placed on hold until further
through regulatory offices such as the FDA if they funding was made available (Mishra and Tiwari
surpass clinical trials and demonstrate efficacy and 2011). In January 2005, Viprinex, a defibrinogen-
safety. ating agent extracted from the Malayan pit viper

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Fig. 1 Structures of well-known natural products

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Phytochem Rev (2015) 14:299315 303

venom (used for many years in Germany for deep Table 1 Big/medium Pharma Companies which have cur-
vein thrombosis and embolism) was fast-tracked for rently ceased (between 2000 and 2013) or are still
bioprospecting
the treatment of acute ischemic stroke. However,
Neurobiological Technologies evaluated Viprinex Arrest Continuation
in Phase III clinical trials and it failed to show
Abbott Dabur
benefits in patients suffering from acute ischemic
Astellas Eisai
stroke; in January 2009 the Viprinex program was
Bayer Novartis
terminated. Almost half of the existing pharmaceu-
Boehringer Ingelheim Otsuka
ticals today are inspired by NPs and in our opinion,
Bristol-Myers Squibb Pierre Fabre
this trend will continue with a substantial amount
Daiichi Sankyo Piramal
of NP derived (leads or extracts) which will
Eli Lilly
successfully reach the market in the future (Lam-
GlaxoSmithKline
ottke et al. 2011). Miller an co-authors stated, that
if it is assumed that 60,000 species of plants have Johnson and Johnson
been screened to yield the 135 known drugs (at the Kyowa Hakko
time), then the 240,000290,000 (or even a higher Merck Sharp and Dohme
figure, to date) the remaining plant species could be Novo Nordisk
expected to yield 540653 new drug candidates Pfizer
(Farnsworth 1990; Newman et al. 2003). In reality, Roche
though 60,000 may have been included in screening Sanofi
programs, most were evaluated against a limited Servier
number of disease targets, so many of the 60,000 Takeda
plant species may still have some chance of All of these companies (and companies which were
yielding additional discoveries (Miller 2011). In subsequently absorbed) were active in bioprospecting in the
addition to their role as drugs, NPs are frequently 1990s. (To the best of the authors knowledge, non-official
corporate information)
used as molecular probes to identify disease
relevant targets and this aspect also justifies
pursuing NP research at the industry level (Schmitt and herbal medicines are not actually divergent to one
et al. 2011). another since more than 50 % of currently marketed
drugs are more or less derived from Earths biodiversity
(Newman and Cragg 2012; Cragg and Newman 2013).
Current status of natural product (NP) research Medicinal plants or herbs thereof are essential for more
than 70 % of the worlds population that do not have
Botanicals (Medicinal Plants and Herbs): potential access to Western medicine, therefore traditional med-
sources of medicine icine is highly recommended by the WHO. This was
endorsed in the 2008 Beijing declaration http://www.
Herbal phytopharmaceuticals which have reached US who.int/medicines/areas/traditional/congress/beijing_
$60 billion, with annual growth rates of 515 % represent declaration/en. Traditional medicine is particularly
a significant share of the total world pharmaceutical well suited to local conditions and represents an ini-
market (Naoghare and Song 2010). The current increase tiative for the future of health in developing countries
may be due to the interest of phytopharmaceuticals in even if the vast majority of physicians have limited
psychosomatic, metabolic and minor disorders. To some understanding of the bioactive molecules present in the
people, synthetic drugs cause harmful side effects and are extracts. Some countries like China, India, Germany
expensive to purchase in comparison with traditional still teach phytotherapy in medical schools and prac-
herbal products, even if natural is not always correlated tice herbal medicine. Botanicals could also be a solu-
with harmlessness. They have been widely used as tion for industrialised countries facing dramatic
medicines, dietary products, and nutritional supplements increases in health costs due to single molecule
since ancient times. Herbal medicines are rich in medicine. It is estimated that around 140,000? Aus-
bioactives and are beneficial for human health. Modern tralians are admitted to hospital every year because of

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problems associated with iatrogenic side effects of Single-molecule NPs and medicinal extracts
Western single molecule medicines (Mackay 1998).
Natural products found in medicinal plants can As mentioned, plants have been the inspiration for an
efficiently mitigate the side effects of serious ill- important number of current drugs today on the market.
nesses, for example, plants can alleviate the effects Though, part of the drug discovery process is based on
of onco-chemotherapy or radiotherapy. Essential serendipity, important discoveries have been initiated on
oils also represent alternatives to antibiotics due to the traditional usage of medicinal plants and subsequent
its resistance properties and are alternatives to isolation of their bioactive constituents. Substantial
expensive treatments with unfavourable risk, bene- synergy and benefits for the development of improved
fits and cost. For example, recently in Brazil a new medicines and new drugs can arise from linking these
anti-inflammatory phytopharmaceutical was devel- powerful analytics to robust, ethno-medicinal and ethno-
oped based on an extract from the leaves of Cordia botanical studies of traditional medicines (Ngo et al.
verbenaceous standardised in a-humulene (12) 2013). Evidence on the traditional usage of medicinal
(Acheflan) (Matias et al. 2013) and is now sup- plants still represents a source for drug discovery and this
planting established synthetic anti-inflammatory knowledge and its implication in drug development are
drugs on the local market. This product is based on today well defined in the framework of biodiversity laws
the traditional usage of this Brazilian medicinal even if they are not always easy to implement.
plant utilising an evidence-based phytotherapy The usage, most importantly the efficacy and safety
approach. There are currently several FDA of traditional medicines can be validated by clinical
approved botanicals available in the global market studies formulated according to the traditional prep-
including Veregen (13) (Tea catechins) for the aration or on standardized extracts. From a pharma-
treatment of external genital and perianal warts cological viewpoint, in many cases, the clinical
(Chen et al. 2008) and Fulyzaq (14) (extract from efficacy of a given plant is not always explainable by
the red sap of the Croton lechleri for the treatment the presence of a single active NP. In essence, the
of HIV diarrhoea (U.S. Food and Drug Adminis- usage of traditional preparations (e.g. tea, decoction,
tration 2013). Sativex a titrated extract containing tincture) corresponds to the intake of complicated
d-9-tetrahydrocannabinol (15) (psychoactive) (Sati- mixtures of NPs that potentially, may have mode of
vex 2013) and cannabidiol (16) (anti-inflammatory) actions on multiple targets (Gertsch 2011). This
has been approved since 2005 in many countries becomes complicated when the preparations consist
(e.g. Canada, The United Kingdom, Germany and of a mixture of varying herbs as in the case of
New Zealand). This botanical prescription drug is Traditional Chinese Medicine (TCM) (Buriani et al.
an oromucosal spray cannabinoid medicine for the 2012). In the perspective of the drug discovery
treatment of spasticity due to multiple sclerosis and process, the development of drug leads ensures the
neuropathic breads of various origins. Marinol beneficial effects of such herbal preparations to be
(17) (dronabinol) and Cesamet (18) (nabilone) are valuable from a global health perspective. The phar-
on the North-American market for the treatment of merging markets (Pharmergings are defined as
vomiting and nausea associated with the chemo- emerging countries in the pharmaceutical world
therapy of cancers. More recently, in 2012 the market) will double their expenditure on pharma-
Dutch Medicines Evaluation Board approved a dry ceuticals, growing to $150165 Bn by 2016, and
extract of Dioscorea nipponica, a traditional Chi- driven by rising incomes, continued low cost for
nese botanical to relief headache, muscle pain and drugs, and government sponsored programs will aim
cramps (Gilbert 2012). This was the first time that to increase access to medicines in developing coun-
a TCM product (Traditional Chinese Medicine) was tries (Kleinrock 2012). Such observations have led to
introduced into a European Union country. The the development of drugs that instead of being pure
inclusion of traditional medicines in the develop- NPs, are actually plant-based extracts with defined
ment of twenty-first century treatment paradigms composition. Such NP extracts are often referred to as
can facilitate economical accessibility, convenience phytopharmaceuticals (EU) or botanicals (USA)
and acceptability. (Chen et al. 2008; Hoffman and Kishter 2013). Their

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status varies from country to country based on the multicomponent mixture is far more complicated to
health claims which are made, and can be registered ascertain and takes into account the bioavailability of
either in the form of dietary supplements or as drugs the constituents, the presence of pro-drugs and the
per se if clinical studies are performed and registration likelihood of synergetic effects (Wagner and Ulrich-
is approved. As previously mentioned, a recent Merzenich 2009).
example is the approval of Veregen (an enriched
extract of tea polyphenols), for the treatment of genital Pro-drugs in natural product extracts
warts linked to human papilloma viruses (Scheinfeld
2008). The same extract is currently under clinical In plants many NPs exist in the form of conjugates
trials against various cancers as both a preventative with sugar moieties (called glycosides). In this way,
and as a direct agent (Newman and Cragg 2012). plants store key secondary metabolites which are
Formulating NP extracts is crucial in a pharmaceu- often involved in defense. These processes have
tical perspective for the cure, treatment or prevention been optimized though evolutionary processes as
of diseases (botanicals) but also from a food industry many of the glycosides are activated upon cell
viewpoint in obtaining positive health profiles (e.g. disruption to yield highly active defense compounds
nutraceutical functional food) (Wolfender et al. 2011). (e.g. glucosinolates and cyanogenetic glycosides)
The notable concerns, especially when dealing with (Bruneton 2009). Frequently, the glycosides are not
plant extracts is the presence of potential pesticides active directly on therapeutic targets however they
and heavy metals as per the requirements of the Good can become bioactively efficient upon metaboliza-
Agricultural Practices (GAP) (Zhang et al. 2010). tion. The glycosides are not active directly on
Toxic constituents (e.g. hepatotoxic compounds such therapeutic targets only when they are subjected to
as pyrrolizidine alkaloids or aristolochic acids) (Stic- an enzymatic process activating the pro-drug.
kel et al. 2005; Chen et al. 2012) and the risks Another example includes laxative herbs (e.g. Aloe)
associated with additional drug interactions must be anthrones which are present in the form of C-
identified beforehand prior to human administration. glycosides that reach the intestine intact, and are
Plants that can be used in such preparations should be hydrolyzed in the intestine in a reductive environ-
Generally Recognized As Safe (GRAS), a classifica- ment to reach their target in the form of anthrones
tion that is recognized by regulation authorities such as (Bruneton 2009). Plant extracts may thus contain
the American Food and Drug Administration (FDA), bioactive NPs in the form of pro-drugs and in some
the European Medicines Agency (EMA) or European cases these compounds can provide optimized
Food and Safety Authority (EFSA) (Nicoletti 2012). derivatives for reaching therapeutic targets. In
In order to safeguard a continuous and approvable several cases, NPs per se have surpassed evolution
therapeutic effect the chemical composition of such to be active in ecological interactions and have been
multifaceted plant-based NP extracts has to be optimized for human usage, this explains why an
authenticated. Standardization procedures currently important proportion of NPs are required to be
exist and are based on the quantification of the active chemically modified for optimal efficacy with
principle(s) (when they are known), the detection of reduced toxicological effects (Newman and Cragg
chemical marker(s) for assessing the correct botanical 2012). In addition, chemical modifications of NPs
origin of the plant material, the acquisition of the can result in the enhancement of the biological
complete metabolite profile (metabolome) and a activity (based on an established pharmacophore),
comprehensive estimation of the biological variability leading to a new chemical entity. It is important to
of the extracts (van der Kooy et al. 2009). In addition, mention that the structure of a new natural
depending on the nature of the plant material used, product cannot be patented per se, only the extrac-
various analytical validations have to be performed to tion/purification processes and/or the use and/or its
ensure the absence of toxic or allergenic compounds application. In other words, a patent office will grant
(Ribnicky et al. 2008). These procedures ensure the a patent, on a chemical structure which was
quality of the botanical in terms of its composition and naturally pre-existing in nature only through the
safety for human consumption. Unlike a pure com- extraction process or industrial application which
pound the pharmacological mode of action of such a has to be truly novel (Anonymous 1973).

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Synergy: The totum effect! drugs (Gertsch 2011). Depending on the molecular
machinery, synergisms can be produced by differen-
The longstanding, successful usage of herbal drug tial (e.g. allosteric) ligand interactions in one single
combinations in traditional medicine makes it neces- protein or downstream effects. Different drugs may act
sary to discover a rationale for the pharmacological synergistically simply by partially inhibiting different
and therapeutic superiority of many NPs in compar- nodes in a given biological network that leads to gene
ison to isolated single molecules (Wagner and Ulrich- expression (Gertsch 2011).
Merzenich 2009). In this respect, due to the concom- Poly-pharmacology and synergisms are creating
itant presence of the bioactive NPs in natural product the next paradigm in NP drug discovery. Complex
extracts, synergistic effects are likely to occur. These aspects (multi-component mixtures acting in complex
properties have been disputed claiming superior biological systems) may be tackled by emerging
pharmacological effects of mixtures of compounds systems biology approaches (Wang et al. 2005;
in botanicals over mono-substances. Such effects, as Fitzgerald et al. 2006; Verpoorte 2012). In particular,
well as poly-pharmacology (a given molecule binds to omics approaches have been used recently, more
different targets) (Gertsch 2011) are however difficult extensively for the study of TCMs (Buriani et al.
to prove experimentally. Synergistic effects, can result 2012). For example, NMR based metabolomics has
in the following: (1) the constituents of a NP extract been applied to the study of human biological
affects different targets (ii) they can interact with one responses to chamomile tea ingestion. The strategy
another to improve the solubility and thereby enhanc- enabled the characterization of the metabolic effects of
ing the bioavailability of one or several substances of chamomile ingestion despite the high degree of
an NP extract and (iii) compounds may also have their variation from genetic and environmental sources
efficacy enhanced with agents that antagonize mech- (Wang et al. 2005). This study highlighted markers
anisms of resistance (Wagner and Ulrich-Merzenich related to the ingestion of herbs and demonstrated the
2009). potential of such an approach in this emerging field.
The verification of a given synergistic effect can be To date, and despite the rapid development of systems
achieved by comparing the pharmacological effects of biology only a few studies have been published, but
the mono-substances versus the combination of sub- comprehensive approaches that combine phytoprofil-
stances by analyzing isobole curves based on data ing and metabotyping are now emerging (Xie et al.
from several dose combinations. The analysis of such 2013). From a clinical perspective, systems biology
curves enables for the discrimination between simple approaches guided by Chinese medicine have revealed
additive effects, antagonistic interactions or real new markers for sub-typing rheumatoid arthritis
synergism with potentiated or over-additive effects patients (van Wietmarschen et al. 2009) and similar
(Berenbaum 1989; Yang et al. 2013). Synergistic strategies have also been applied for studying effects
effects have been studied, for example, the combina- of TCM for complex diseases. Altogether, such
tion of ginkgolide A (19) and B (20), two compounds holistic approaches might provide evidence of efficacy
known to have anti-PAF effects in phytopharmaceu- of personalized medicine, which is intrinsically linked
tical preparations of Ginkgo biloba. The study of the to the usage of traditional medicine by healers
isobole curves with different doses of these com- (Verpoorte et al. 2005), such studies might ultimately
pounds demonstrated clear synergetic effects (Wagner lead to evidence-based phytotherapy and provide a
2005). Many of these types of studies as well as multi- means to differentiate placebo effects from existing
target effects [summarized in reference (Wagner pharmacological efficacy.
2011)] has presented evidence for the therapeutic
superiority of plant extracts over single isolated The interaction of drugs with botanical extracts
constituents, as well as their bioequivalence with
synthetic chemotherapeutics. Despite evolutionary While extracts and multicomponent mixtures are often
clues to molecular synergism in nature, sound exper- argued to have higher efficacy than single constituents
imental data is lacking and new concepts such as poly- in the context of phytotherapy, the alternative is that
pharmacology and network pharmacology are emerg- the ingestion of these complex mixtures have greater
ing in the context of the pharmacology of botanical probability to lead to drugdrug interactions, and in

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this context many herbs or botanicals are at risk established traditional usage and well-defined com-
(Posadzki et al. 2013). For example, phyto-prepara- position may be conducted to demonstrate evidence of
tions containing Hypericum perforatum (Saint Johns efficacy. Systems biology approaches on well-defined
Wort) have demonstrated to cause multiple drug cohorts should reveal biomarkers associated to the
interactions through induction of the cytochrome therapeutic effects. Furthermore, target discovery
P450 enzyme CYP3A4 with drugs such as cyclo- approaches may be conducted to understand the mode
sporin, indinavir, simvastatin, fexofenadine, and of action of NP extracts and the information of the
digoxin (Hammerness et al. 2003). The metabolism active principles of the extracts may be retrieved by
of these drugs increases, resulting in a decrease in the in vitro assays. Another approach is to use virtual
concentration and thus has negatively impacted clin- screening software which uses existing libraries of
ical effects. In this case, the principal constituents compounds to test panels of targets (e.g. antitumor)
thought to be responsible is hyperforin (21) which is with the aim of identifying selectivity and specific
the bioactive NP partly responsible for the pharmaco- pharmacological activities (Lauro et al. 2012). Ulti-
logical in vitro effects that have explained the anti- mately, this strategy should guide the drug discovery
depressant activity of the NP extract (Muller et al. process in finding or developing new NPs as mono-
2001). In the in vitro pharmacological assays, the substances or formulate phytoextracts possessing ideal
extract was found to be more active than hyperforin chemical profiles.
(21) alone, and some companies have marketed Saint
Johns Wort extracts with low amount of hyperforin
(21) to reduce such interactions whilst still claiming Current methodologies for assessing biologically
good clinical efficacy (Woelk 2000). active natural products

From clinical trials on traditional medicines Complexity of natural extracts and lead
to bioactive natural products and lead compounds identification
(Reverse pharmacognosy)
Unlike classical medicinal or combinatorial chemistry
In the field of drug discovery all knowledge related to compounds, NPs are reputedly difficult to screen and
traditional medicine, clinical trials on NP extracts are to advance in the R&D pipeline. The molecular
potential sources for finding new targets by utilizing complexity of most of the bioactive NPs (number of
reverse pharmacology methodologies or explaining asymmetric centres, functional groups etc.) often
the mode of action of specific botanicals. Reverse discourages the researcher since the total or semi-
pharmacology also known as target based drug synthesis is often not a trivial task. When the
discovery became popular after the sequencing of the accurately identified sample enters the laboratory, its
human genome which allowed for the rapid cloning composition can differ according to edaphic and
and synthesis of large quantities of purified proteins. In climatic parameters, seasonal variation, and may be
this context Bedside to Bench approaches in contaminated by endophytic micro-organisms (e.g.
combinations with systems biology may also be of endophytic fungi residing in plants). Both terrestrial
great interest and the application of a combination of and marine organisms can contribute and/or modify its
ethno-pharmacological know-how with modern in chemical composition, due to abiotic and biotic
silico tools may lead to the discovery of new NPs stresses which can be problematic when attempting
(Rollinger et al. 2006; Rollinger 2011). Gene differ- to re-isolate a class of novel NPs and these aspects
ential expression technologies in mechanistic studies should be taken into consideration more often with
of NP-derived drugs have also shown to be of acuity (Kusari et al. 2012). Undoubtedly, in industry
significant potential (Chen and Jiang 2012). At this HTS automation is the likely means of targeting
level, systems biology approaches (Verpoorte et al. bioactivity whilst in many academic institutions due to
2005, 2009) and in silico tools may assist in the drug limitations in funding, HTS is not generally used in-
discovery process of the studies aimed at explaining house and often requires outsourcing with limitations
the mode of action of traditional preparations. For to the number of possible biological screens. Of
example, clinical trials on GRAS botanicals with course, utilizing modern techniques of HTS at least in

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theory, can lead to the identification of NCEs and hits, the work carried out by Nicolaou in 19992000 and
but the serendipity behind analyzing a less uncommon Waldmann from 2002 onwards. When Big Pharmas
terrestrial or marine organism should not be over- started their discovery programs based on HTS
looked (Michael et al. 2008; Frearson and Collie 2009; techniques, NPs provided the bioactive diversity, with
Macarron et al. 2011). hundreds of thousands of structurally diverse com-
The chemodiversity of NPs is much larger than pounds readily available for robotic automation. This
those of synthetic compounds (Feher and Schmidt technological revolution assisted the Big Pharmas to
2003) and when a screening campaign does not shift to this new paradigm. Research started from
provide any result with classical organic compounds, molecular targets, to the cell, to groups of cells, to
NPs represents the final opportunity to address this isolated organs, to small animals, to larger animals and
issue. NPs play a significant biological role in then finally to patients. The random and systematic
terrestrial and marine organisms, and have evolved evaluation of vast libraries of chemicals likely to
to interact with enzymes, receptors and ionic channels. modulate a specific biological target is the principle of
They have the reputable advantage of being born to be HTS (David and Ausseil 2014). The series of biolog-
active in living cells, able to cross membranes, ical responses of chemical compounds or fractions
interfere with enzymes or even act against parasites. after a HTS screening campaign produces hits.
It is noteworthy to mention that many human These results are then controlled, confirmed and
pharmaceutical targets have equivalent systems in validated in order to be amenable in the drug discovery
the organisms studied for their NP content. Natural program. Hits will then be optimised by classical
products belong to chemical families that have been medicinal chemistry reactions in order to become
known since the nineteenth century, but the number of leads, which then enter into preclinical develop-
possible combinations is unlimited and minor chem- ment. HTS represents several advantages as it is fast
ical differences may have significant pharmacological and avoids the me-too approach, since this can provide
differences. Unquestionably, NPs are not designed for unexpected and potentially original active com-
all targets but since many are defense products, they pounds. The very small scale of the assays allows for
probably address vital and universal processes; this hundreds of thousands of experiments to be performed
can explain why cancer drug discovery lures most of within a single day but at this molecular level it is also
the research funds than in any other therapeutic area a disadvantage since the interactions of small mole-
(Danck et al. 2010). cules with a receptor, an enzyme, and an ionic channel
are only the very first steps in the discovery process.
High-throughput screening (HTS) Therefore, hits are easily obtained but they are
versus evidenced-based traditional medicine meaningless, valueless and void at the patient scale.
As additional, novel elaborate assays for example
From the beginning of the nineteenth century to the using, animal/human organs are generated, a signifi-
1980s, NP discovery has relied mainly on clinical, cant amount of time and resources would still be
pharmacological observations, traditional knowledge, inevitably invested. This broad funnelling effect is
well documented usage (evidenced-based phytother- named attrition and only around 1 in a million of the
apy) and/or serendipity. Bioassays performed in the evaluated molecules in fact escapes this attrition and
twentieth century on small animals and isolated organs reaches the market through to FDA approval. Pre-
provided the vast majority of the chemical entities fractionated NP extract libraries are also used in HTS
currently on the pharmaceutical market today. HTS and are demonstrating interesting activities in a wide
was rising from 1,000 assays to 200,000 assays per day variety of screens/diseases with novel agents being
by the middle of the 2000s. Crude extracts were found from plants, microbes and marine organisms.
effectively evaluated in 96 and subsequently 384 well Eldridge et al. (2002), describe their HTS process, in
plates where the target enzymes/receptors ushered which each sample is separated by a parallel 4-channel
the combinatorial chemistry screening methodologies. preparative HPLC into 200 fractions that are then
The subsequent lack of efficacy of the combichem analysed by a parallel 8-channel LC-ELSD-MS. The
libraries then led to the use of carefully chosen CC authors state that 60 % of the analysed fractions
libraries that were built around NP skeletons such as contain detectable compounds with 15 compounds

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Phytochem Rev (2015) 14:299315 309

per fraction. A total of 36 fractions containing The zebrafish, Danio rerio, is a small, tropical
detectable compounds can be made, and these frac- freshwater fish from India whose embryos are usable
tions are collectively called the library from which as in vivo HTS models. It has been nicknamed the
smaller, more focused libraries are drawn for screen- vertebrate drosophila, since it is genetically trac-
ing and rapid purification, however this leads to a table as a model of developmental biology and the
substantial increase in expenditure (Eldridge et al. living embryos can be used in the HTS screening in
2002). simple and reliable drug discovery programs. Several
Another disadvantage of HTS versus approaches hundreds of eggs are produced by the female, the cost
based on careful selection on well documented of the embryos is very low and the development is
traditional usage is the narrowness of the screening. efficient. The zebrafish model is the perfect tool to run
In evidence-based phytotherapy it is likely that the High Content Throughput Screening (Challal et al.
molecular and pharmacological mechanism will be 2012). The embryos are transparent and it is possible
identified, however when working on NP extracts it is to study the effect of a molecule on different organs at
not possible to use a magic-wand to isolate every the same time on the living animal and hundreds of
compound present. For example, a single plant extract transgenic lines are available (Novodvorsky et al.
can contain from hundreds to thousands of structurally 2013). Zebrafish is an efficient model not only for the
different compounds belonging to various compound drug discovery process but also for target validation,
classes (Verpoorte et al. 2005). Evidence-based phy- toxicity studies and drug optimization (Li et al. 2012).
totherapy is a complementary approach which can
provide reliable research orientations by the valorisa-
tion of plants traditionally for a long time in the market Limitations in natural product discovery
for which bioactive principles or standardized extracts
can be valorised with less risk of toxicity compared to Chemotaxonomy
classical HTS based on serendipity. The financial
investments necessary to market a new chemical entity Organisms in particular plants are often collected by
(NCE) are substantial and many pharmaceutical the researchers and unlike the medicinal chemists who
groups are relying on the historical, well known active purchase their starting materials from an e-catalogue,
principles on the traditional usage of medicinal agents the NP researchers collects the plants themselves or
which represents a valid and reputable source of through botanists. When carrying out HTS, collec-
evidence (Helmstadter and Staiger 2013). tions (terrestrial or marine) need to be substantial to
The most important factors for improving the drug provide optimal sampling. According to chemotax-
discovery process are the enhancement of predictabil- onomy, a vast systematic diversity within samples
ity and confidence of the target (Bunnage 2011). will offer a qualitatively vast chemodiversity and a
Initially, the methodology began with phenotypic high taxonomic difference between two samples will
screening, to HTS and then to no phenotypic screening provide high chemical diversity. However, taxonomy
but target based screening in combi-chem/HTS finally has its limitations especially when dealing with
to HTS and high content screening (Swinney and endophytic organisms (e.g. bacteria and fungi) resid-
Anthony 2011). HTS automation allows for the ing on terrestrial and marine organisms (e.g. plants
understanding of a large number of pharmacological and algae). If this is the case, it is likely that that a
experiments on very basic models. Before beginning proportion of the NPs isolated from plants are actually
screening on the basic assay, the next step would be to products of interactions between microbes in and
utilize more sophisticated assays and finally the around the plant than from the plant itself. Working on
delivery of a clinical evaluation on humans has to be marine organisms is even more complicated due to the
selected and fully anticipated. This scheduling is logistics in sample collection, recollection, and taxo-
required, otherwise the project will reach a bottleneck, nomical identification. Most of the time, marine
this is why high content screenings are appreciated in organisms are unique biocenosis (biological commu-
order to save time-consuming steps. One example nities) for example; two organisms living one meter a
includes the zebrafish model which provides many part from each other can present different chemical
advantages for drug discovery screening programs. compositions.

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310 Phytochem Rev (2015) 14:299315

In one example, Jing and co-workers, isolated three Access and benefit sharing issues
anthracenediones from an unidentified endophytic
fungus, colonising mangroves (Jiang et al. 2000). When collecting plants, botanical identification is not
Another example includes the isolation of 4 cytoha- the only factor to take into consideration. Respect of
lasins and 11 novel sesquiterpenoids from the cultures rights of the land owner, of diverse laws (protected
of the mitosporic fungus, Geniculosporium sp., an species), phytosanitary and customs regulations are key
endophyte associated with the red alga Polysiphonia and crucial aspects. A significant change occurred on the
sp. (Krohn et al. 2005), therefore consideration should 29th of December 1993, upon the entry in the applica-
be taken with taxonomical identification. Methods for tion of the Convention on Biological Diversity which
the isolation and identification of endophytes are well moved the genetic resources from common heritage of
documented by (Zhang et al. 2006). mankind to the sovereignty of the states where they live.
Obtaining the correct Latin name for a collected The Convention on Biological Diversity (CBD) was an
organism or determining the correct scientific name is agreement signed in June, 1992 by the international
not trivial. The most difficult task is to source a community in Rio de Janeiro, Brazil (Anonymous
terrestrial or marine organism in the wild with the 1992) . The three objectives of the CBD are to conserve
correct genus and species. Herbarium vouchers need the biodiversity, to sustainably use the genetic resources
to be prepared, since DNA analysis has not yet and to share the benefits arising from the use of these
replaced herbarium samples. Field collections and resources in a fair and equitable manner. Article 2 of the
botanical identification cannot be automated unlike CBD, defines biodiversity as the variability among
biological screening and combinatorial chemistry living organisms from all sources of terrestrial, marine
(Miller 2011). Implementation of HTS requires only and other aquatic ecosystems and ecological com-
small amounts of plant material, but very quickly, plexes. This includes ecosystem diversity, species
additional amounts will be required for hit confir- diversity between and within species. The scope of the
mations and even larger quantities for further phar- CBD applies only to genetic resources according to
macological assays and preparation of analogues by Article 2: Genetic resources defined as any material
medicinal chemistry. Further investigations, depen- of plant, animal, microbial or other origin containing
dent on plant recollections are often disappointing functional units of heredity of actual or potential value.
since anthropic pressure can occur within only a few In the 1990s, it was apparent to the Big Pharma
weeks to an irreversible loss of organisms and habitats. industries that the national claims about the genetic
Respecting the protected species, avoiding duplication resources will overflow to the biological resources.
in libraries, collecting the correct plant species which These latter resources being the NPs, the secondary
are not sterile since identification is based on flower metabolites are valued by pharmaceutical and cosmetics
and fruit architecture are noteworthy tasks. The enterprises. This situation created juridical uncertainty
precise scientific nomenclature associated with a which diverted most of the Pharma sector from NP
collection enables a fruitful usage of databases; for discovery programs. In the late 1990s many pharma-
example the Dictionary of Natural Products (www. ceutical companies decommissioned their NP discovery
dnp.chemnetbase.com) which correlates plant names programs or merged. Further details are presented in
and chemical content. Valid names and systematic Table 1.
botany could be perceived as limitations but are nev- To improve this unfavourable situation, the inter-
ertheless precious for the NP chemist (Erkens 2011). national community united in Nagoya in October, 2010
Taxonomy is cumbersome due to the intricate issues of to clarify access to biological and genetic
synonymy which add complications to the use of resources (Anonymus 2011). The Nagoya Protocol
databases and bibliographic references. Systematic (NP) covering access to genetic and non-genetic
botany appears to be out-dated in the midst of the resources was agreed as an international instrument.
modern omics techniques but its role is still sub- NPs will contribute to the conservation and sustainable
stantial. The disinterest for systematic botany and the use of biodiversity through the fair and equitable
poor renewal of specialists is somewhat alarming as sharing of benefits arising from their uses which in turn,
plant taxonomists themselves are an endangered will result in livelihood gains to both developing and
species! Western countries (Anonymus 2011).

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Phytochem Rev (2015) 14:299315 311

All public or private researchers will be required to included in the scope, the possible retroactivity by date
seek Prior Informed Consent (PIC) and to negotiate a of usage. Access and Benefit Sharing national laws
Mutually Agreed Term (MAT) with the representative will be implemented, the impact on NP drug discovery
of the source country. According to the Aichi objec- research activities, on innovation and business activ-
tives, these regulations will have to be implemented in ities in the near future. Adequate regulations are
the party states by 2015. Anyone entering in R&D expected to be taken in order to make this international
processes will require a PIC and a MAT negotiated legislative process effective and conducive towards
with the source country about conditions of Access achieving the access, benefit sharing and conservation
and Benefit Sharing. According to Article 2, R&D on of biodiversity objectives.
NPs is clearly covered by this new regulation as per,
(Article 2c: Utilization of genetic resources defined
as conducting research and development on the Future directions in natural product research
genetic and/or biochemical composition, including
through the application of biotechnology). One Natural product research is advancing even though it is
should expect flexible accessibility to rules to be difficult to maintain long-term expensive R&D pro-
realistic and beneficial to all parties. Some biodiver- grams, especially in the pharmaceutical industry, but
sity-rich countries have already implemented national this will likely survive and develop in academic
regulations, but their practical applications and inter- universities (Beutler 2009). There are great expecta-
pretation are often cumbersome. There is a disparity tions, on both the pharmaceutical industry and to some
between theoretical regulations and their everyday extent, academic institutes to identify the elusive,
applicability (Kingston 2011). Stringent rules on magic bullet, however it is likely that natural drugs
accessing genetic resources may have counterproduc- may evolve from single-molecule NPs to well-defined
tive and paradoxical effects for conservation and enriched bioactive extracts. As technologies for NPs
research even locally (Gilbert 2010). There is gener- advances, analyses of limited amounts of compounds
ally a huge asymmetry between expectations of present in extracts for biological screening will be
Benefit Sharing of biodiversity-rich countries and the possible due to increases in both the sensitivity and
possible benefit sharing of the academic or industrial dynamic linear range of analytical platforms (Hong
users in the fields of pharmacy and cosmetology. Often 2011; Schmitt et al. 2011). Advances in ultra-sensitive
enough, access permits to biodiversity-rich countries analytics for the rapid identification of novel bioactive
are fairly difficult to negotiate and require several NPs and sophisticated NMR structure prediction
years of uncertain processes. The issue and suspicion software will continue to improve the efficiency of
about bio-prospecting can be explained by historical the NP discovery process (Baker 2007). Natural
standing points of exploitation of national, natural product studies have an image of sophisticated and
resources drifting from colonial times. The seminal often hyphenated techniques that often fails when
contract between Merck and INBio in 1991 was often dealing with complex mixtures. This can be overcome
mentioned as an example to follow, but no commercial by emerging fields such as metabolomics which deals
results and returns on investments occurred. This with mixtures and uses the power of multivariate
contract has received criticism later by some NGOs for statistics to identify potential biomarkers (e.g. new or a
insufficient local consultations. The improbable large unique class of natural products) (Roessner 2011).
turnover provided by some unique NPs like taxoids Data mining approaches to identify bioactive NPs in
unfortunately does not reflect the reality of possible mixtures, from a library of terrestrial and marine
returns from pharmaceutical industries. In the aca- organisms are currently being developed and will be
demic sector, the probability of such success is essential for the development of effective multiple-
extremely low. For example, the NCI worked for agent drugs from traditional medicines (Ngo et al.
decades on 114,000 extracts from 12,000 different 2013). Another aspect will be the assessment of the
species to find only paclitaxel and camptothecin variation of the metabolome of body fluids in the
(Kingston 2011). Some very important questions framework of clinical trials, involving complex phy-
remain unanswered: there is no clear cut between the topharmaceutical or herbal preparations to completely
commodities (outside the scope) and the resources assess the efficacy of such therapies though a systems

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312 Phytochem Rev (2015) 14:299315

biology approach (van Wietmarschen et al. 2009; closed their bioprospecting programs they kept an eye
Wang and Chen 2013). on start-ups and universities.
One important aspect is the preservation of biodi-
versity and access to organisms, in particular in
Conclusions biodiversity rich countries which constitute a key issue
which could hamper a serene utilisation of natural
The industrial usage of dietary supplements, botani- products to develop new drugs (as pure compounds or
cals or phytopharmaceuticals in Western countries and extracts) in developing countries (Genilloud 2012).
traditional plants in developing countries is expanding Nevertheless, researchers in public and private sectors
readily as well as emerging technologies (e.g. meta- need juridical security. Access to samples in particular
bolomics) and the advent of sensitive analytics will in biodiverse rich countries is problematic and iron-
ensure the quality control of these products on the ically, in the meantime the losses of biodiversity under
market. Progress towards traditional medicine, drug overexploitation and anthropic pressures have never
control based research on DNA analyses and gene been so dramatic. Natural products are of high
differential expression is providing a new frontier. The intrinsic value, but they carry many risk factors such
WHO is aware of the importance of the worlds as legal access, supply and re-supply, identification of
terrestrial and marine biodiversity, especially with activity, intellectual properties and the value chain is
regards to medicinal plants which have a track record long and uncertain. One of the major challenges is to
of offering unique and affordable therapeutic solutions implement fair, reliable, simple, and transparent
for minor disorders and sometime even major diseases access regulations. The forthcoming implementation
like malaria to both developing and Western countries. of the Nagoya Protocol should break the vicious circle
Seventy percent of people rely on plants (either as of unrealistic expectations and conditions of accessi-
mono-substances or botanical extracts), most of the bility to biodiversity for researchers.
time, this is not by ideological choice but due to
economic reasons. Modern techniques for the quality Conflict of interest The authors state no conflict of interest
and have received no payment in preparation of this manuscript.
control of traditional drugs will continue to validate
the positive benefits, costs-risk ratio of such therapies
(Jiang et al. 2010) and, DNA analyses and gene
differential expression techniques will hopefully References
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