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CRL researchers identify hidden Chris Cross team identifies new molecular
cardiovascular disease in an historic insights on tuberculosis in the Cobb Collection
population by looking at rib notching For his dissertation research, doctoral student Christopher Cross and
his team have developed a novel computational pipeline to recover and
identify the microbial content using DNA extracted and sequenced from
19th and 20th century African American teeth and petrous bones. Over
the summer his team successfully identified numerous bacterial spe-
cies in these samples. Among those observed were several species of
tuberculosis, including human Mycobacterium tuberculosis. These find-
ings provide a molecular level diagnosis which in some cases verify the
clinical cause of death. To our knowledge, no one has successfully
conducted this type of work on non-modern highly contaminable hu-
man skeletal remains of African Americans. His team is very excited
about these results and are currently performing additional analysis.
Over the summer, three medical students from Howard
University College of Medicine, Shihyun Kim, Kesley
Green and, our own, Nicholas Guthrie, embarked on a Coding of DNA Collection Surveys Completed
new project on the Cobb Collection aimed at identifying Over the summer, Masters student Taiye Winful (UNC-Charlotte)
hidden hypertension in this unique collection. Their pro- (pictured below) led a Howard University team that completed the coding
ject began as an investigation of rib notching as an indi- of all of the 464 surveys collected during our recent DNA Collection
cator for hypertension and other cardiovascular diseas- event. The purpose of this initial coding was to lay a foundation for the
es. As the project progressed, they found that the rib development of two databases: 1. a Continental African Genomic Data-
notching also showed some correlation with heart dis-
base (CAGD) and 2. an African Diasporic Genomic Database (ADGD).
ease in the Cobb Collection individuals. These prelimi-
She and her team have now begun a descriptive analysis of the sur-
nary findings were presented on a research poster at an
veys that will address the following questions:
internal session at the Howard University College of
Medicine in the last week of May, and the trio plans to 1) How many individuals were in each database location (CAGD vs
continue the project over the school year with additional ADGD)?
support from CRL researchers.**** 2) What were the proportions of Howard University community members
sampled?
HIGHLIGHTS OF THIS ISSUE 3) What were the gender distributions in each database?
DNA Collection updates! 4) What was the place of birth of participants? What geographical areas
are not yet represented?
CRL researchers identify unique approach to 5) What are the nationalities and ethnicities of participants?
see hypertension in a skeletal population 6) What is the average age of participants and the range in ages?
New molecular insights on tuberculosis dis- 7) What is the current residential state of participants? Which states are
covered in the Cobb Collection missing in our distribution?
ABG grave soil yields unique chemical signa- These descriptive results will be incorporated
tures into Taiyes Masters thesis and provide a ra-
tionale for subsequent targeted sampling in the
Cobb Research Lab expands summer out- fall and winter to augment the developing data-
reach programs bases. Taiye hopes to come to Howard Universi-
Backbones to Life Series takes off with 4 new ty for graduate studies for her Ph.D. in biology in
stories 2018****
Editors Essay: What to do about our horrific READ MORE UPDATES ON OUR GRADUATE
past? STUDENTS RESEARCH IN THE FOLLOWING
PAGES OF THIS ISSUE
CRL News, vol 4, no 4, Summer 2017
Carter Clintons team uncovers unique chemical In addition, to comparing the results of our UMD XRF to
signatures in African Burial Ground grave soils NIST reference material, we have reached out to Dr.
Richard Shaw, USDA state soil scientist, who has per-
Throughout the 2017 summer months, Howard University Ph.D. stu- formed a soil survey of New York City. These data can
dent Carter Clinton (pictured on the right) has conducted an ongoing be considered control samples used for comparison with
investigation of New York African Burial Ground grave soil samples. the NYABG samples. Carter and his team will be able to
Specifically, he has looked into the elemental analysis of these sam- determine baseline levels of elements in the soil as well
ples . Carter has been fortunate to run these data at the University of as significant levels of elements in the ABG soil. This
Maryland, College Park under the direction of expert soil chemist and comparison will provide insight in to what activities were
lecturer, Dr. Candice Duncan. The investigation consists of using x-ray performed by the inhabitants in the area. From this, we
fluorescence (XRF) technology, a non-destructive exploratory technol- can reconstruct events occurring during the 17th and
ogy, to identify all elements present in a sample. The methodology 18th centuries in lower Manhattan. ****
calls for a small amount of required sample (2 grams) to be com-
pressed into pellet form with a binding agent that wont interfere with
analysis, in this case, urea. The small sample mass is carefully con-
Carter Clinton
sidered because the quantity of these grave soils are extremely lim- stands outside
ited. The remaining portion of each sample can then be used in other the NIST head-
important analyses as well as for archival purposes. quarters in Mary-
land. Carter is
The data generated from the XRF device is compared with several the recipient of
NIST (National Institute of Standards and Technology) SRMs research funding
(Standard Reference Materials). After purchasing an initial SRM, from Sigma Xi,
Carter and Dr. Duncan reached out to NIST for background infor- National Geo-
mation of the standard. This conversation and the interest in the graphic Explor-
NYABG project prompted an invitation for the two, to the NIST ers, and is a Just
-Julian Fellow at
Gaithersburg facility as well as a donation of four additional SRMs to
Howard Univer-
contribute toward the research. While at the NIST facility, Dr. John
sity.
Sieber, ran an analysis of the grave soil sample on their government
regulated XRF device and has extended an invitation to Carter to re-
turn in the future to run the remaining samples on this equipment. This
opportunity will validate and verify that the results obtained from the
XRF device at UMD are accurate. (continued on next column)
Writers Collective continues summer output of childrens stories on the African Burial
Ground population in Backbones to Life Series
In the Spring 2017 semester, Howard Universitys Cobb Research Laboratory founded a new branch to the research team known as
the Writers Collective. One aspect of this collective is to write fictional short stories for young readers depicting the lives of those bur-
ied in the New York African Burial Ground (ABG) in what was named the Backbones To Life Series. Each story is based on scientific
findings from the skeletal remains and archaeological findings, as published in the Cobb Research Lab NYABG Collection of Scholarly
Volumes (see our website: www.cobbresearchlab.com). The ABG burial ground was the final resting place for thousands of enslaved
and free Africans in what is now modern-day Lower Manhattan, New York City. The site was also used by some poor Europeans dur-
ing the 17th and 18th centuries. Nutritional stress, infectious disease, and osteoarthritis plagued the majority of the people interned
there. It is our mission to recount their stories using the technical findings from the ABG project and add historic information from the
time period as the foundation for these stories. We want our young readers to understand the connections between the ailments of our
protagonists, the conditions in which they lived, and the resources they used to survive.
STEM and history also play a role in creation of the stories. Though works of fiction, the stories retain accurate scientific and historical
information. A time warp from present-day scientific research on a specific burial ground site to a specific year between 1600-1800
occurs in the beginning of each story. We aim to promote both an interest in the STEM fields and provide an educational experience for
the reader.
There remains a growing need for these types of books aimed towards young children. The population as a whole in this country has
been traditionally educated on the history of slavery as solely an institution of the American South. However, New York City was the
second-largest slave holding colony in early America, second only to Charleston, South Carolina. In fact, New York was the last north-
ern colony to abolish slavery in 1827. Often, textbooks and our school system tend to downplay the brutal conditions of enslavement
and the lingering effects that it still has on our lives today. Due to these failures, young people often do not learn about this unless they
choose to pursue the information on their own. The Backbones to Life series introduces readers to a segment of American history, via
characters who use traditional knowledge and insights from various regions of Africa and the Americas together with science and com-
mon sense to solve the problems they face. (Report continued on next page)
This summer 2017, Gretchen In May 2017 , doctoral students, Gretchen Johnson and Christo-
Johnson, (pictured on left) pher Cross (pictured below) traveled to the University of Toronto.
Ph.D. student at the CRL has Through a collaboration with Dr. Anne Agur and her research team
been working steadily on pro- at the University of Toronto, Canada, they developed a new tech-
gressing on her doctoral re- nique to retrieve the petrous bone from the human skull with mini-
search on the historic popula- mal damage. This technique and others are planned to be utilized
tion of Africans deposited on St. on the African skeletal remains on St. Helena to obtain the most
Helena Island (South Atlantic). usable quantities of high quality DNA from the remains of each
Her research is focused on as- individual. Christopher Cross may also use this technique in his
sessing the human skeletal research on tuberculosis. Special thanks to Dr. Agur and the Uni-
remains of previously enslaved versity of Toronto for this new collaboration with the Cobb Re-
mid-19th century Africans who search Laboratory. ****
were liberated by British anti-
slavery efforts, but subsequent-
ly died on the South Atlantic Group Picture
island. She is combining forensic and molecular genomic of University of
analyses, and archaeological/historical contexts to recon- Toronto collab-
struct a snapshot of the lives and surrounding environment orators (right to
of the mid-19th century individuals originally buried at Saint left) Christo-
Helena. These results will then be compared with data from pher Cross,
the enslaved individuals from the 17th and 18th century New MSc., Gretchen
York African Burial Ground (ABG).
Johnson, MSc.,
Dr. Anne Agur,
Through a recent collaboration with Christopher Cross, Dr. PhD., Ian Bell.,
Anne Agur and her research team at the University of Toron- MSc.
to, Canada, a new technique was designed to retrieve the
petrous bone from the human skull with minimal damage.
This technique and others will be utilized on the African skel-
etal remains on St. Helena to obtain the most usable quanti-
Two CRL researchers present at Society of
ties of high quality DNA from the remains of each individual. Molecular Biology and Evolution (SMBE)
Data gathered will allow for human identification and ances-
tral origins of this historic population on St. Helena. Current- Conference in July 2017
ly, Gretchen is practicing techniques for the accurate and
prompt retrieval of the petrous bone in the Anatomy Lab at In July, doctoral students, Gretchen Johnson
Howard University. and Njlaa Bakhsh (pictured on left) attended
the Society of Molecular Biology and Evolution
She is looking forward to traveling to St. Helena Island (SMBE) Conference in Austin, Texas. Gretch-
(South Atlantic) this upcoming fall to begin collecting the en presented her research entitled
petrous bone from the skeletal remains of the historic popu- Reconstruction of early population history
lation of liberated Africans. She is motivated to further her of Africans in the Americas through St.
research with more investigations to unravel St. Helenas
Helena Island (South Atlantic) and New
central place in the Slave Trade, a history rarely acknowl-
edged. To assist with the memorialization efforts in St. Hele- York City and Njlaa presented her research
na, Gretchen will be creating a GoFundMe webpage to raise entitled The Missing landscape of human
monetary funds. Stay tuned for an update on this new genomic diversity in the Arabian Peninsu-
webpage and information on how you can help! la. Both
poster
In July, Gretchen presented a poster on her research pro- presenta-
gress at the Society of Molecular Biology and Evolution tions were
(SMBE) Conference in Austin, Texas. Also, she attended the
Penn State University Bootcamp on Reproducible Research. well re-
This Bootcamp reinforced key concepts in Bioinformatics ceived. Gretchen and Njlaa
and Statistics which will be incorporated into the analyses of enjoyed visiting interesting ses-
the skeletal remains of the liberated Africans deposited on sions and talks that ranged from
St. Helena Island. ancient DNA studies, epigenet-
ics, molecular innovation, evolu-
The Howard University Institutional Review Board has re- tionary genomics, human ge-
cently approved Gretchens research on the skeletal remains
netics and gene regulation.
on St. Helena Island and she has been awarded research
funding from National Geographic and a Just-Julian Fellow- Also, both were able to connect
ship.**** with collaborators from the Uni-
versity of Copenhagen and net-
PLEASE CONSIDER DONATING TO THE work with other researchers and
COBB RESEARCH LABORATORY TO attendees at the conference.
SUPPORT STUDENT RESEARCH. Overall, it was a great, enrich-
ing experience.****
CRL News, vol 4, no 4, Summer 2017
CRL Expands Summer K-12 Outreach In July, we had 27 elementary school children age five
through ten from the Beth Shalom AME Zion Church STEM
The Cobb Research Lab values development and enrichment of interdis- Summer camp. The children were treated to an all-day
ciplinary interest in students who have the potential to excel in the fields workshop of science activities. First, we had them do a
of science, technology, engineering, and mathematics. As a part of that biological experiment to extract DNA from strawberries.
mission, the lab hosted all-day workshops in science and creative writing The students learned the simple technique which produces
for five community organizations this summer that support minorities in separation in the strawberry matter, with a clear portion in
the STEM fields as a part of our community outreach efforts. In total, we which the DNA strands are visible to the naked eye. This is
hosted 151 students from kindergarten to undergraduate level in the a particularly fun experiment which gained interest amongst
months of June and July. the young children. Second, we showed them a skeletal
body from the Cobb Collection and taught basic human
In June, eighteen Pre-Pharmacy undergraduates came to Douglass Hall
skeletal anatomy. The children had a chance to ask ques-
where we engaged them in a history lesson followed by creative writing
tions as they examined the bony structures that make the
workshop based on the Cobb Research Labs two skeletal collections;
human bodys structural foundation. Lastly, we read a sam-
The Cobb Collection and The New York African Burial Ground (ABG)
ple short story from the Writers Collective that described
Collection. As the only historically black college with skeletal collections,
the narrative of a young boy working on the docks of the
we pride ourselves on having over 400 years of African American history
Hudson Bay in 17th century New York.
in the form of these remains which affords us the possibility of ground-
breaking research on campus. Earlier this year, the lab founded the Writ- Also this month, we hosted 30 middle school and high
ers Collective, a collaborative project to write short stories and bio- school aged girls from the General Electric Girls, Inc pro-
histories based on scientific findings from these collections. As an exten- gram. (see article on previous page). We taught similar
sion of the Writers Collective, the writing workshop aimed to educate the DNA extraction from strawberries, skeletal anatomy, and
students on the historical context of the ABG and give an opportunity to creative writing. Another 30 high schoolers from a Pre-
strengthen creative writing skills. The ABG was a burial site for free and Pharmacy group participated in an anatomy study. These
enslaved Africans and African Americans in 17th and 18th century New two groups were a pleasure to host as they were interested
York colony, which has significant long-lasting relevance to the infra- in the science and were passionate about careers in vari-
structure, economy, and culture of this country. From an examination of ous fields of study.
the past, we encouraged students to reflect on what it may have been
At the end of each all-day workshop, we surveyed learning
like to live and die in colonial New York as someone whose remains now
objectives to quantify success of the outreach initiatives.
rest in one of the ABG burial site numbers. The undergraduates, who
We were happy to learn that many of the students were
plan to pursue careers in medicine, pharmacy, dentistry, and veterinary
excited to have the opportunity to examine skeletal re-
medicine, created detailed outlines of short stories after being assigned
mains, participate in collaborative creative writing, and per-
information on an anonymous individual from the burial site. Some stu-
form a simple scientific experiment with basis in biology
dents were particularly excited for the chance to engage their creative
and genetics. The Cobb Research Lab looks forward to
side, and even had one student interested in joining the Writers Collec-
ongoing partnerships with the community at large to extend
and support the advancement of STEM in minority groups
that may often be limited to opportunities elsewhere. ****
Biomedical Advances
Our 2016 publication on 400 Years of Biological History of
African Americans (published in the American Journal of Hu-
man Biology) has been selected as the Editors Pick for Bio-
medical Advances (ISSN 2573-0355).
www.cobbresearchlab.com
Members of the CRL Meet for an End-of-the-Year Dinner at Busboys & Poets
On the evening of August 27th, 2017, 13 members of the CRL
gathered at the Busboys & Poets restaurant on 5th and K St
NW DC for a celebratory dinner. They had worked hard the
past academic year and throughout the summer and had ac-
complished a great deal. This dinner was a thank-you pre-
sent from the CRL Director. Along with Dr. Fatimah Jackson,
present were post-docs Dr. Latifa Jackson (NIH and HU Col-
lege of Medicine) and Dr. Brad Wilson (HU College of Medi-
cine), and Howard University graduate students Esohe Irabor,
Gretchen Johnson and Carter Clinton. Also in attendance
were HU medical students Nicholas Guthrie and Shihyun Kim,
post-baccalaureates Rita Okolo, Cameron Clarke, and Mariam
Mohammed and HU undergraduates Adetomiwa Victor
Owoseni and Obinna Asawabelem. All are pictured to the left.
The party sat at a long table in the restaurant, and ordered
everything from vegetarian dishes to steak. CRL members
who had not previously met used this opportunity to do so.
Those who had travelled shared details about their journeys:
CRL News, vol 4, no 4, Summer 2017
Members of the CRL Meet for an End-of-the-Year Dinner at Busboys & Poets
(continued from previous page)
While some had gone overseas to Africa, Asia and Europe,
others had crossed the country for conferences or work-
shops in Texas, New York, and California. For many of the
CRL members, this was the first meeting that they had ever
had with so many other lab members outside the academic
setting. They enthusiastically talked about their hobbies and
experiences, and lit up when they found similarities
amongst themselves. For over an hour, CRL members
laughed over food, shared their sentiments about the past
academic year, and their hopes for the next one. At the end
of the night, CRL members took a group picture and dis-
banded, wishing each other success in their future endeav-
ors.****
Five members of the research group had their work accepted for
presentation at this international conference: These included:
Dr. Fatimah Jackson, Gretchen Johnson, Christopher Cross,
Carter Clinton and Dr. Latifa Jackson. Their research covered a
diverse array of human genetics related projects including the
Cobb Collection genomic analyses, the forced migration of Afri-
cans in St. Helena Island (South Atlantic), the genomic analysis Dr. Latifa Jackson (left) officially represented the
of New York African Burial Ground grave soil samples, and the
Cobb Research Laboratory and Howard University at
role of genomic testing and its interpretation on African American
the 2017 European Society for Human Genetics
identity. ****
meetings. The electronic poster sessions (above)
provided a convenient and high-tech approach to
CRL News, vol 4, no 4, Summer 2017
information transfer.