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Abstract
We describe in this work the identification and the conjugal properties of two cryptic plasmids present in the strain Sinorhizobium
meliloti LPU88 isolated from an Argentine soil. One of the plasmids, pSmeLPU88b (22 kb), could be mobilised from different S. meliloti
strains to other bacteria by conjugation only if the other plasmid, pSmeLPU88a (139 kb), was present. This latter plasmid, however, could
not be transferred via conjugation (frequency 6 1039 transconjugants per recipient) contrasting with the conjugal system from the
previously described strain GR4, where one plasmid is mobilisable and a second one (helper) is self-transmissible. Despite the differences
between the two systems, the conjugative helper functions present in the cryptic plasmids of strain GR4 were active in the mobilisation of
plasmid pSmeLPU88b from strain LPU88. Contrasting with this, plasmid pSmeLPU88b was not mobilised by the helper functions of the
broad-host-range plasmid RP4. Eckhardt gel analysis showed that none of the plasmids from strain GR4 were excluded in the presence of
plasmid pSmeLPU88b suggesting that they all belong to different incompatibility groups for replication. The small plasmid from strain
LPU88, pSmeLPU88b, was only able to replicate in members of the Rhizobiaceae family such as Rhizobium leguminosarum, Rhizobium
tropici and Agrobacterium tumefaciens, but not in Escherichia coli or Pseudomonas fluorescens. The observation suggests that most likely
plasmid pSmeLPU88b was not received from a phylogenetically distant bacterium.
> 2003 Published by Elsevier Science B.V. on behalf of the Federation of European Microbiological Societies.
symbiont of Medicago spp., neither of the symbiotic plas- narrow-host-range cryptic plasmid is mobilisable by a
mids (pSym-a and pSym-b) could be spontaneously mobi- non-transmissible but bigger helper plasmid.
lised under laboratory conditions [10]. The introduction of
mobilisation genes (mob) of plasmid RP4 into pSym-a,
however, allowed its conjugative transfer to Agrobacterium 2. Materials and methods
tumefaciens. Contrasting with pSym-a and pSym-b, the
occurrence of transmissible cryptic plasmids in S. meliloti 2.1. Bacterial strains and plasmids
is frequent. Unfortunately, so far only few functions have
been associated with the presence of such cryptic plasmids, The strains and plasmid used in this work are listed in
which have been little characterised [15]. Table 1. S. meliloti isolates were obtained in the laborato-
The cryptic plasmids of S. meliloti GR4, pRmeGR4a ry using soil samples collected at INTA Castelar (Buenos
and pRmeGR4b, are the best-characterised non-symbiotic Aires, Argentina) and Medicago sativa cv. CUF101 as
plasmids in rhizobia [16^19]. It has been shown that plas- trapping plant. Escherichia coli strains were grown at
mid pRmeGR4a is self-transmissible and able to mobilise 37‡C on LB medium [24]. Rhizobia and A. tumefaciens
the accompanying plasmid pRmeGR4b. This latter plas- were grown at 28‡C on TY medium [25] or YEM [26]
mid carries the nodule formation e⁄ciency genes that are medium. For the solid media 15 g of agar per liter of
involved in the determination of the strain competitiveness medium was added. The ¢nal concentrations of antibiotics
for nodulation [20,21]. S. meliloti GR4 cosmid clones con- per milliliter medium were 10 Wg gentamicin and 6 Wg
taining mobilisable DNA inserts from plasmids pRme- tetracycline (Tc) for E. coli; and 400 Wg streptomycin
GR4a/b have already been identi¢ed [22], but their oriT (Sm), 50 Wg gentamicin, and 6 Wg tetracycline for S. meli-
sequences are not available yet. In addition, another nine loti.
DNA fragments with ability to behave as oriT regions
were also recognised in strain S. meliloti GR4 [22]. 2.2. Bacterial matings
The design of molecular tools for the detection of con-
jugal functions in rhizobial strains needs the isolation and Bacterial matings were performed as described by Si-
characterisation of new plasmids that represent the diver- mon et al. [28]. Brie£y, liquid cultures were grown to early
sity of the transfer systems towards the identi¢cation of exponential phase for donor cells (optical density at
common elements as detection targets. Despite the re- 600 nm 0.1^0.2) and late exponential phase for recipient
markable diversity of cryptic plasmids reported for S. me- cells. Donor and recipient were mixed in a microcentrifuge
liloti [23], the plasmids of strain GR4 are the only ones tube in a ratio of 1:1. The mating mixture was concen-
analysed in their conjugal functions. In this paper, we trated by 8 min centrifugation at 640Ug. The pellet was
present the isolation and functional characterisation of a ¢nally suspended in 50 Wl of the same medium and loaded
binary conjugal system from S. meliloti where a small and onto a Millipore ¢lter (0.2 mm pore size). Filter mating
Table 1
Bacterial strains and plasmids used in this work
Strain or plasmid Description Source
Bacterial strains
E. coli S 17-1 E. coli 294 RP4-2-Tc: :Mu-Km : :Tn7 integrated into the chromosome [28]
S. meliloti 2011-Sp Spr derivative of strain 2011 Smr Nodþ , Fixþ This work
S. meliloti GR4 Wild-type strain [41]
S. meliloti GRM6 GR4 cured of plasmid pRmeGR4b [16]
S. meliloti LPU86 Wild-type isolate from Argentina This work
S. meliloti LPU88 Wild-type isolate from Argentina This work
S. meliloti 20MP6 Derivative of S. meliloti 2011, Smr , Tcr , GFP [38]
R. tropici CIAT 899 Wild-type, symbiont of Phaseolus vulgaris P. van Berkum
R. etli CE3 Symbiont of P. vulgaris. Smr derivative of strain CFN42 E. Mart|¤nez
R. leguminosarum bv. viciae VF39 Wild-type, symbiont of Pisum sativum U. Priefer
A. tumefaciens UBAPF2 Plasmid-free, Rifr [42]
P. £uorescens bv II LP19 Wild-type isolate G. Favelukes
Plasmids
pRK2013 RK2 conjugal functions, Kmr [43]
pSUP1021 pSUP102 carrying a Tn5 insertion [31]
pSUP102: :Tn5-B13 pSUP102 carrying a Tc-mob Tn5 derivative [32]
RP4 IncPK plasmid, Kmr Apr Tcr [44]
pSmeLPU88a Cryptic plasmid from strain S. meliloti LPU88 (139 kb) This work
pSmeLPU88b Cryptic plasmid from strain S. meliloti LPU88 (22 kb) This work
pSmeLPU88a: :Tn5-B13 pSmeLPU88a carrying a Tn5-B13 This work
pSmeLPU88b: :Tn5 pSmeLPU88b carrying a Tn5 This work
mixtures were placed on TY agar plates and incubated PA, USA). Polymerase chain reactions (PCR) of 25 Wl
overnight at 28‡C. contained: 50 mM Tris, pH 8.3; 500 mg ml31 bovine
serum albumin (BSA); 3 mM MgCl2 ; 200 WM dNTPs ;
2.3. DNA manipulation 1 U Taq polymerase (Promega); 10 WM primer MBOR-
EP1; and 10 Wl of template DNA, previously obtained by
Plasmid DNA preparation, restriction enzyme analysis, heating a freshly isolated bacterial colony in 50 Wl of dis-
cloning procedures, and E. coli transformation were per- tilled water to 100‡C for 15 min. The ampli¢cations were
formed according to previously established techniques carried out in capillary tubes in an Idaho 1605 Air Ther-
[27]. mo Cycler (ATC, Idaho Technology). The cycling condi-
tions were as follows: 94‡C for 7 min, 30 cycles of 94‡C
2.4. Plasmid pro¢les ^ Eckhardt gels for 10 s, 52‡C for 10 s, 72‡C for 2 min, and a ¢nal ex-
tension at 72‡C for 2 min. After the reaction, 10 Wl of the
Cells were grown in TY medium to mid-exponential PCR products were separated in 1% agarose gels contain-
phase. One hundred microliters of culture were collected ing 0.5^1 Wg ml31 ethidium bromide, and photographed
in a microcentrifuge tube and mixed with 500 Wl 0.3% using Polaroid 667 ¢lm.
Sarcosyl in TBE bu¡er. The cell suspension was centri-
fuged for 30 s at 14 000Ug and the supernatant discarded. 2.7.2. Ampli¢cation of nptII sequences from Tn5
The cell pellet was resuspended in 40 Wl of loading bu¡er A 400-bp DNA fragment of the Tn5 neomycin phos-
(10% sucrose, 0.01 mg ml31 ribonuclease A, and 1 mg photransferase (nptII) gene was PCR-ampli¢ed using the
ml31 lysozyme) and applied to a 0.7% agarose gel contain- following primers : nptII-f, 5P-TGG GCA CAA CAG
ing 1% sodium dodecyl sulfate in TBE bu¡er. Electropho- ACA ATC-3P; nptII-r, 5P-CCC CTG ATG CTC TTC
resis was run during 6 h at 80 V and 10‡C. Plasmid bands GT-3P. PCR mixtures of 25 ml contained: 50 mM Tris,
were observed under UV illumination after staining of the pH 8.3; 500 mg ml31 BSA; 3 mM MgCl2 ; 200 mM de-
gel with 0.5^1 Wg ml31 ethidium bromide [29,30]. oxynucleoside triphosphates; 1 U Taq polymerase (Prom-
ega); 0.5 WM concentration of each primer; and 10 ml of
2.5. Tn5 plasmid tagging for conjugal transfer detection template DNA. Cycling conditions were as follows : 94‡C
for 15 s, followed by 35 cycles of 94‡C for 10 s, 53‡C for
First, Tn5 from plasmid pSUP1021 [31] was randomly 10 s, 72‡C for 20 s, and 72‡C for 1 min. Ampli¢cation
introduced by conjugation into strain LPU88 selecting for products were visualised in agar gels with ethidium bro-
streptomycin and neomycin resistance. The transconju- mide as described above.
gants were then used en masse as donors in mating with
strain 2011-Sp. Transfer of neomycin resistance to the re- 2.8. Plant nodulation assays
cipient strain 2011-Sp was indicative of conjugal transfer.
M. sativa seeds (alfalfa, cv. CUF101, obtained from the
2.6. Forced mobilisation of rhizobial plasmids using Instituto Nacional de Tecnolog|¤a Agropecuaria, La Pam-
transposon Tn5-B13, a mob-containing Tn5 derivative pa, Argentina) were surface-sterilised for 10 min with com-
mercial bleach 20% v/v (NaClO concentration equivalent
Rhizobia carrying the plasmid to be mobilised were to 55 g active Cl2 l31 ) followed by six washes with sterile
mutagenised with the transposon Tn5-B13 (Tc-mob) [32]. distilled water. Surface-sterilised seeds were germinated on
The Tn5-B13-containing rhizobia were then used en masse water-agar (1.5%, w/v). For competition studies 2-day-old
as donors in a triparental mating with S. meliloti 2011-Sp seedlings were transferred to Q-irradiated sterilised plastic
(recipient strain) and E. coli DH5K (pRK2013) that pro- growth pouches (Mega Minneapolis International, Minne-
vided the helper plasmid. Transconjugants were ¢rst de- apolis, MN, USA) containing 10 ml of nitrogen-free Jen-
tected according to their expected Tcr Smr phenotype. The sen mineral solution, pH 6.7 [35]. Three days later, roots
presence of mobilised plasmids in the transconjugants were co-inoculated with a mixture of two microbial strains
from the donor rhizobia was ¢nally evaluated by analysis (106 cfu per 100 Wl inoculant each) by dripping 100 Wl of
in Eckhardt gels. the bacterial suspension onto the root from the tip to-
wards the base. The rhizobia were obtained from exponen-
2.7. Oligonucleotide primers and PCR conditions tial-phase YEM cultures. The plants were cultured in a
growth chamber at 22‡C and a 16-h photoperiod. The
2.7.1. DNA ampli¢cation ¢ngerprints CFU contained in the inocula were estimated by plate
Total DNA ampli¢cation ¢ngerprints were performed counts.
using primer MBOREP1 as previously described [33,34]. Since one of the inoculated rhizobia bears a chromo-
The sequence of the primer is as follows : 3P-CCG CCG somal gfp (see Table 1), nodule occupancy was observed
TTG CCG CCG TTG CCG CCG-5P. The deoxyoligonu- for 4 weeks by examination of plant roots under a Carl
cleotide primers were synthesised by DNAgency (Malvern, Zeiss-Jena £uorescent microscope either with visible light
3. Results
tions present in trans (mobilisable plasmid), conjugation UBAPF2 though with less e⁄ciency than from strain
tests were carried out using strain S. meliloti 2011-Sp LPU88. Interestingly, the use of strain GRM6 (a deriva-
(pSmeLPU88b : :Tn5) as donor and A. tumefaciens tive cured of plasmid pRmeGR4b) instead of GR4 im-
UBAPF2 as recipient strain. Since no transconjugants proved transfer e⁄ciency of plasmid pSmeLPU88b: :Tn5
were obtained (frequency 6 1039 transconjugants per (Table 2).
recipient) we concluded that most likely plasmid pSme-
LPU88b was not self-transmissible in the genomic 3.4. Replication host range of the 22-kb plasmid
background of strain S. meliloti 2011-Sp. As expected pSmeLPU88b
plasmid pSmeLPU88b : :Tn5 could be mobilised to di¡er-
ent bacteria from the original strain LPU88 (frequency Plasmid pSmeLPU88b: :Tn5 was transferred by conju-
6U1033 transconjugants per recipient). These results sug- gation from S. meliloti to di¡erent bacterial species and
gest that strain LPU88 carries conjugative helper functions the neomycin-resistant transconjugants analysed in Eck-
that are not present in strain 2011-Sp. hardt gels to con¢rm plasmid transfer (and to discard
Since the presence of helper functions in trans had al- transposition). Plasmid replication was observed in Rhi-
ready been described for strain S. meliloti GR4 [19], we zobium tropici, Rhizobium etli, Rhizobium leguminosarum,
investigated if the conjugal functions required to mobilise and A. tumefaciens. The plasmid did not replicate either in
plasmid pSmeLPU88b were present in the accompanying E. coli or in Pseudomonas £uorescens. Results suggest that
plasmid pSmeLPU88a. Upon construction of strain S. me- replication of plasmid pSmeLPU88b is possibly restricted
liloti 2011-Sp (pSmeLPU88a: :Tn5-B13, pSmeLPU88b: : to bacteria of the Rhizobiaceae family. Anyhow, it cannot
Tn5) the smaller plasmid could be e⁄ciently transferred be discarded that the Tn5 insertion could a¡ect the repli-
to A. tumefaciens UBAPF2. The collected evidence dem- cation of the plasmid in certain bacterial species.
onstrated that plasmid pSmeLPU88a was necessary to
support the conjugal transfer of plasmid pSmeLPU88b. 3.5. Nodulation competitiveness of S. meliloti 2011 carrying
plasmid pSmeLPU88a or plasmid pSmeLPU88b
3.3. Functional complementation between the helper
functions of S. meliloti plasmids from di¡erent It was previously shown that one of the cryptic plasmids
geographic origins: plasmid pRmeGR4a from the present in strain GR4 modulates strain competitiveness for
European strain GR4 is able to mobilise plasmid the nodulation of alfalfa [20,21,36]. Furthermore, previous
pSmeLPU88b from the local strain LPU88 evidence has shown that non-symbiotic cryptic plasmids
may be involved in the biosynthesis of bacteriocins that
During the construction of the genotypes presented can modulate competitiveness [11,37]. In order to assess
above, we observed that the conjugal functions of the whether the presence of any of the cryptic plasmids of
widely characterised plasmid RP4 (incPK group) did not strain LPU88 was associated with changes in nodulation
promote the mobilisation of plasmid pSmeLPU88a/b, and competitiveness, strain S. meliloti 2011-Sp (pSmeLPU88a)
vice versa. To get further insight into the functional rela- and strain S. meliloti 2011-Sp (pSmeLPU88b) were sepa-
tionship between the helper functions of di¡erent S. meli- rately co-inoculated with strain S. meliloti 20PM6 [38] on
loti plasmids, we analysed the ability of plasmids from the alfalfa roots. The nodule occupancy of each rhizobium
European strain GR4 to promote the mobilisation of plas- was scored after a month as indicated in Section 2. No
mid pSmeLPU88b. For this purpose we constructed strain major di¡erences between any of the bacterial genotypes
S. meliloti GR4 (pSmeLPU88b: :Tn5) which was assessed were observed indicating that none of the plasmids signi¢-
as donor of the received plasmid to A. tumefaciens cantly a¡ected competitiveness.
UBAPF2. Eckhardt gel analysis showed that replication
of plasmid pSmeLPU88b was compatible with the pres-
ence of plasmids pRmeGR4a and pRmeGR4b. Plasmid 4. Discussion
pSmeLPU88b was transferred from strain GR4 to strain
In this paper we describe the isolation and transmissi-
bility properties of two cryptic plasmids from the strain
Table 2
Mobilisation of plasmid pSmeLPU88b : :Tn5 S. meliloti LPU88. One of the plasmids, pSmeLPU88b
(22 kb), appeared to be mobilisable if helper functions
Donor strain Transfer
frequencya were supplied by the accompanying plasmid pSmeLPU88a
(binary conjugal system). This latter plasmid behaved as
LPU88 (pSmeLPU88b: :Tn5) 6U1033
2011-Sp (pSmeLPU88a: :Tn5-B13, pSmeLPU88b: :Tn5) 5U1034 non-transmissible via conjugation. It is unlikely that the
GR4 (pSmeLPU88b : :Tn5) 3U1037 non-transmissible phenotype of plasmid pSmLPU88a was
GRM6 (pSmeLPU88b : :Tn5) 2U1034 due either to inappropriate quorum-sensing e¡ects or to
a
All conjugations were made using A. tumefaciens UBAPF2 as recipient the lack of unknown host^plant factors: the plasmid Tra
strain. Results are given as the ratio of transconjugants to recipient. functions were functional in mobilising the accompanying
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