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Biotechnological Applications of Proteases

in Food Technology
Olga Luisa Tavano , Angel Berenguer-Murcia, Francesco Secundo, and Roberto Fernandez-Lafuente

Abstract: This review presents some of the hottest topics in biotechnological applications: proteases in biocatalysis.
Obviously, one of the most relevant areas of application is in the hydrolysis of proteins in food technology, and that has
led to a massive use on proteomics. The aim is to identify via peptide maps the different proteins obtained after a specific
protease hydrolysis. However, concepts like degradomics are also taking on a more relevant importance in the use and
study of proteases and will also be discussed. Other protease applications, as seem in cleaning (detergent development), the
pharmaceutical industry, and in fine chemistry, will be analyzed. This review progresses from basic areas such as protease
classification to a discussion of the preparation of protease-immobilized biocatalysts, considering the different problems
raised by the use of immobilized proteases due to the peculiar features of the substrates, usually large macromolecules.
Production of bioactive peptides via limited hydrolysis of proteins will occupy an important place in this review.
Keywords: bio-functional peptides, controlled proteolysis, degradomics, protease, protease immobilization

Introduction zyme isolation and production techniques have facilitated the di-
Food biotechnology, considered as applications of biotechno- rect application of purified enzymes (Schmid and others 2001;
logical processes, started before 6000 B.C. Fermenting grapes or Kirk and others 2002; Kaul and Asano 2012; Li and others 2013).
brewing beer are examples of this initial food biotechnology, even These technical advances permitted to extend the range of known
though they were crude ones at that (Mishra and others 2016). In enzymes and improve the characterization of their conforma-
fact, the application of enzymes in food technology was already tions and catalytic mechanisms, making their application simpler
established in these processes. Another example of this “primi- (Pogson and others 2009; Li and others 2013; Filici and others
tive” food biotechnology (Mishra and others 2016) is the use of 2017; Strack 2017). At this point, both academic and industrial
rennet. This shows the successful use of a protease mixture from interests meet (Neurath 1999), or it could be said that both ba-
the stomach of calves in cheesemaking practiced for centuries sic and applied sciences now focus on proteases. They offered a
(Moschopoulos 2016). Actually, proteases may be notable among wider range of likely applications, and also permitted to under-
hydrolases for their industrial uses. They are a collection of en- stand many life cycles of living beings (Huang and others 2017).
zymes of the outmost relevance that is still applicable in the food Proteases, thanks to their variants and different activity specifici-
industry, followed by transferases (Vermelho and others 2016). ties, show their intimate relation with biological cycles of the
Enzymes are well inside the concept of Biotechnology (“any tech- diverse living beings (López-Otı́n and Overall 2002; Perez-Silva
nological application that uses biological systems, living organisms, or and others 2016; Huang and others 2017). These life-cycles, in
derivatives thereof, to make or modify products or processes for specific turn, mirror adaptive and evolutionary courses of living beings,
use”) (Food and Agriculture Organization 2017). As previously and can even alter as an answer to pathological processes (Huang
presented, proteases are among the first enzymes utilized for this and others 2017). In this sense, degradomics, a strong “omic”
kind of application and their utility still stands strong. However, approach (López-Otı́n and Overall 2002; Perez-Silva and others
the ways of utilization of these enzymes have changed over time. 2016), has permitted a wide look at the biodiversity of proteases.
Initially, they were mainly used as extracts of animal or vegetable A degradome can be defined as the whole diversity of proteases
tissues, or complete microorganism cells. The advances in en- in an organism, tissue, or cell at a determined time. Degradomics
is focused on elucidating the proteases that are presented at a de-
fined time in a particular medium (which may be cross-referenced
CRF3-2017-0203 Submitted 10/8/2017, Accepted 11/24/2017. Author Tavano without the knowledge of the physiological state of that specific
is with the Faculty of Nutrition, Alfenas Federal Univ., 700 Gabriel Monteiro da Silva specimen), including information on the enzyme-substrate and/or
St, Alfenas, MG 37130-000, Brazil. Author Berenguer-Murcia is with the Inorganic
Chemistry Dept. and Materials Science Inst., Alicante Univ., Ap. 99, E-03080, Ali- enzyme-inhibitor also presented (López-Otı́n and Overall 2002;
cante, Spain. Author Secundo is with the Istit. di Chimica del Riconoscimento Moleco- Perez-Silva and others 2016). Degradomics enriches this “catalog”
lare, CNR, v. Mario Bianco 9, 20131 Milan, Italy. Author Fernandez-Lafuente is of protease diversity (Figure 1).
with Dept. of Biocatalysis, ICP - CSIC. Campus UAM-CSIC. Cantoblanco, ZC This complexity of vital cycles and their changes among differ-
28049, Madrid, Spain. Direct inquiries to authors Tavano and Fernandez-Lafuente
(E-mail: tavanool@yahoo.com.br, rfl@icp.csic.es).
ent organisms provides a huge range of proteases having different
functions and, consequently, a wide variety of specificities and


C 2018 Institute of Food Technologists®

412 Comprehensive Reviews in Food Science and Food Safety r Vol. 17, 2018 doi: 10.1111/1541-4337.12326
Proteases in food technology . . .

Figure 2–Schematic representation of how proteases interact with a


substrate or under certain environmental conditions to promote the
characteristic of the process and final product.

Particularities of Protease Activities


Although the folding and the primary structure of a protease are
of the utmost significance in determining the interaction between
Figure 1–Schematic representation of the relationship between the substrate and the enzyme, theories stress that a second way
degradomic and protease repertories for biotechnological applications. of interaction from a post-binding stereo-adjustment would also
be very important (Michel 2016). This way, the substrate-enzyme
connection would be determined by both preexisting conforma-
structures (Krem and others 2008; Puente and others 2003), in- tions (conformational selection) and the own changes induced by
cluding proteases appropriately designed for different applications the substrate on the enzyme conformation (induced fit) (Johnson
in metabolic processes, ranging from those applicable to the “lim- 2008; Michel 2016). The importance of the induced fit in enzyme
ited proteolysis” (processing involves proteases with a very high specificity has been debated (Johnson 2008), but the influence of
specificity and the cleavage at a limited number of specific peptide the flexibility of the protein chain and their transition states for
bonds in the protein to yield an active or mature form of the protease performance have been fully accepted. The interaction
protein) to those applicable to “degradative proteolysis” processes of the protease molecule with its substrate, or its structural char-
(generally seeks a more extensive hydrolysis of a target protein acteristics, has been used to divide proteases into several useful
including the cleavage of multiple peptide bonds and the even- classifications. For example, if the peptide substrate runs through
tual complete turnover of the protein to amino acids) (Gotiesman the whole extent of the protease active site framework and is
and Maurizi 1992). This large library of proteases may be used cleaved somewhere in its middle point, then the enzyme is called
in different processes, and it is constructed mainly through this endopeptidase (McDonald 1985). In a similar way, we call exopep-
huge diversity of performances towards enzyme specificities and tidases those proteases that act next to the end of the polypeptide
reactions (Li and others 2013; Sanman and Bogyo 2014). The chains. They can be named aminopeptidases if they attack at the n-
protease specificity mirrors how this biocatalyst interacts with the terminus or carboxypeptidases if they hydrolyze peptide bonds at the
substrate to produce its hydrolysis, the core of protease utilizations c-terminus. The exopeptidases are categorized as dipeptidyl- or
(Figure 2), and this noticeably will be imitated on the proper- tripeptidyl- peptidases if they eliminate peptides of 2 or 3 terminal
ties of the final product (McDonald 1985). Understanding how amino acids (McDonald 1985).
proteases perform their function and how to control these func- Proteases are affected in their activity by the pH value in the
tions is of relevance in the search for new biocatalysts (Castro and reaction medium as all enzymes are. This optimal pH may condi-
Martı́n-Hernández 1994). This concept will be further discussed tion the usefulness of a protease for a specific industrial application.
below. Thus, proteases are also classified by their optimum pH, as alkaline
In this context, this review intends to highlight subjects related (pH > 7.0) (or even high alkaline-proteases (pH > 10.0)), neutral
to the features and types of processes in this wide universe that (around pH 7.0), or acidic proteases (pH < 7.0), (Sumantha and
includes the utilization of proteases. others 2006, Gupta and Ayyachamy 2012).


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Proteases in food technology . . .

In the international system for the nomenclature and classifi- resistant to urea action, significantly more active, and much more
cation of enzymes (EC number) developed in the 1950s (Webb resistant to autolysis than bovine trypsin. A previous chymotrypsin
1993), proteases are located in class 3, as Hydrolases, subclass 3.4., digestion of the protein, followed by trypsin treatment has been
hydrolysis of peptide bonds, which is divided into 13 sub-subclasses shown to be more effective in the hydrolysis of membrane pro-
depending on their catalytic mechanism (McDonald 1985). The teomes, where arginine and lysine are less frequent and decrease
better understanding of protease structures, their substrates, and trypsin activity (Fischer and Poetsch 2006). Amongst non-trypsin
their inhibitors has permitted other classifications of protease con- proteases, Lys-C has been a remarkable protease, followed by chy-
sidering their chemical structures, such as the MEROPS peptidase motrypsin, Glu-C, pepsin, LysN, AspN, and ArgC (Tsiatsiani and
database, which was founded in 1996 (Rawling and Barrett 1993; Heck 2015; Giansanti and others 2016).
Rawling and others 2008; Rawling and others 2012; Rawlings This way, trypsin is finding many uses when moderately large
and others 2016), and since then it has grown into a large library fragments of protein chains are desirable, and this is based on the
of peptidases, in which by 2016 reached a total of 2457 entries possibility of producing a reproducible, controlled, and low degree
(Rawlings and others 2016). Another classification is based on the of hydrolysis of the protein substrates.
catalytic sites of the protein and their tertiary structure, taking into It should be considered that protease autolysis can be a drawback
account the iconic amino acid or metal present in the active site during the preparation of samples in proteomic analysis (Gobom
they are divided into: cysteine peptidases (C), aspartic peptidases and others 1997). This is a particular and especially undesirable
(A), serine peptidases (S), metallo peptidases (M), mixed catalytic feature of proteases, when a protease molecule becomes the sub-
type (P) and unknown type (U) (Rawling and Barret 1993; Polgár strate for another protease molecule, producing contamination of
2005; Rawling and others 2008). Serine proteases are known for the samples with these protease chain fragments. To prevent this,
their very well described catalytic triad including a catalytic Ser, low concentrations of proteases are utilized, thereby reducing the
and they are a very easily recognized type of proteases (Rawlings autolysis process but also decreasing the target reaction rate. Tech-
and Barrett 1993; Barrett and Rawlings 1995), of which subtilisin- niques such as immobilization, as will be discussed later, can solve
like and trypsin-like proteases are the most interesting family of this cause of sample contamination (Gobom and others 1997).
enzymes considering their multiple applications. Another example of an application that benefits from a high
It is also possible to highlight the differences in the grades of specificity of the enzyme is cheese production. Cheesemaking is
protease specificity (McDonald 1985). There are proteases able traditionally initialized by milk coagulation, after protease modi-
to attack peptides and proteins in very different positions, while fication, to destabilize the casein micelles, followed by the precip-
other proteases are much more selective by attacking only a very itation of these unstructured proteins. In the first step, calf rennet
specific amino acid sequence. Obviously, these diverse specificities (having pepsin and chymosin activities as major components) is
determine their possible uses. For some applications, a high speci- the “protease” most used in cheesemaking (Machopoulou 2016).
ficity or selectivity may be a disadvantage, while in other cases it Bovine chymosin is an aspartyl protease obtained from the abo-
may be positive and even become the key for successes in a certain masum of suckling calves. This is the main component of calf
application, as we will discuss below. rennet and has a very narrow specificity that enables the spe-
cific breakage of the Phe 105-Met 106 bond of the κ-casein
Narrow specificity or selectivity as an advantage (Machopoulou 2016). In this way, cheese manufacture usually
In some cases, a severe control over the hydrolysis of a protein starts via this controlled κ-casein hydrolysis producing the milk
by a protease is desired. Proteases with a very high specificity, that protein coagulation. Any appropriate rennet substitute must fulfill
is, those that recognize only a few sequences, have significance both this high specific caseinolytic activity and small-generalized
in some cases. Trypsin is a good example of this. The enzyme proteolytic activity (Mohanty and others 1999; Kumar and others
hydrolyzes protein molecules where they exhibit arginine or lysine 2005), keeping the possibility of protein precipitation and targeted
as P1 (Olsen and others 2014). It may seem unfavorable to utilize a clot generation. Later, it will be discussed how an excessive grade
protease that produces so low a degree of hydrolysis in the substrate, of proteolysis enhances the protein hydrolysate solubility, harming
but in some circumstances we may contemplate that “less is more.” the generation of the initial clot. Diverse proteases (plant, micro-
Two examples show the advantage of a narrow specificity of bial or animal sources) have been evaluated as rennet substitutes
proteases: cheese manufacture, specifically aiming at curd forma- (Ghorai and others 2009). We can highlight the use of an aspartyl
tion (making of the milk clot) and analysis of mass spectrometry protease from Rhizomucor miehei in cheese production (Mohanty
for proteins of the hydrolyzed proteins. Trypsin, either pancreatic and others 1999; Kumar and others 2005). Actually, several strains
porcine or bovine, is the family of proteases most broadly utilized of Rhizomucor miehei have been evaluated as milk-clotting enzyme
in the hydrolysis of protein samples for proteome analysis, use- producers, together with a commercial enzyme from A. niger var.
ful due to its high specificity. This way, the treatment can release awamori strain (GCAAP4) or a recombinant strain of Aspergillus
specific and “standard” peptide fragments that enable to achieve niger var awamori (Mohanty and others 1999; Kumar and others
“peptide maps” (Giansanti and others 2016; Trevisol and others 2005). These new proteases can hydrolyze some undesired peptide
2016). This allows the identification of the samples under study. bonds of k-casein, but their specificities are close enough to that
Trypsin hydrolysis of proteins also has the advantage of producing of calf chymosin (Moschopoulou 2016).
not very long peptides with basic C-terminus, which are suitable
for collision-induced dissociation (CID) tandem mass spectromet- Narrow specificities as a disadvantage
ric analysis (Stosova and others 2008; Tsiatsiani and others 2015). Analysis of amino acid composition is a standard protein de-
Other sources of trypsin-like or even other enzymes have been termination protocol which is broadly utilized in physiology,
considered to be used in sample preparation for proteomic studies pharmacology, food chemistry, proteomics, and nutrition studies.
(Wang and others 2009; Trevisol and others 2016). Kiser and oth- The amino acid profile of the hydrolysate shows the dietary protein
ers (2009) suggested trypsin from Streptomyces erythraeus as a can- quality in protein assessment (Fountoulakis and Lahm 1998; Weiss
didate for its utilization in proteomic analysis, because it is more and others 1998; Masuda and Dohmae 2010). The total amino

414 Comprehensive Reviews in Food Science and Food Safety r Vol. 17, 2018 
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Proteases in food technology . . .

acid analysis technique consists of hydrolysis of the problem pro- that may be harmful for human wellbeing (Castro and Martı́n-
tein followed by separation and detection of all the amino acids. Hernández 1994).
However, this hydrolysis phase is still today a key point not fully However, a critical item when studying enzyme samples di-
resolved. The analysis needs that the target peptides or proteins rected to food processes is the security assessment of the enzyme
are fully hydrolyzed to release all the amino acid residues. It must producer strain. That way, to find a protease that may be appli-
be considered that a full enzymatic hydrolysis of proteins to amino cable from the point of view of specificity and/or stability is not
acids is still not possible, as a “super enzyme” able to hydrolyze enough. It is required that both the enzyme and the enzyme-
each bond between peptides in each existing protein is unavail- producing microorganism are accepted as health-safe. This cer-
able. One answer to this problem is the combined utilization of tificate is granted by the Joint FAO/WHO Expert Committee
several proteases with dissimilar specificity. Thus, some researches on Food Additives (JECFA). This is an international expert sci-
have suggested enzymatic alternatives to the classic chemical acid entific agency that is administered by the Food and Agriculture
hydrolysis, alternatives that utilize sequential treatments with dif- Organization of the United Nations (FAO) and the World Health
ferent proteases to achieve a high percentage of hydrolysis, but Organization (WHO). It has been holding meetings since 1956,
the “boiling acid” treatment is still the process of choice even mainly to assess the safety of food additives. As described in Gen-
with the problems that this method has. The enzymatic strategy eral Specifications and Considerations for Enzyme Preparations
remains restricted to specific utilizations, like the identification of used in Food Processing: “Enzyme preparations consist of biologi-
some amino acids that are unstable in hot acidic medium, such cally active proteins, at times combined with metals, carbohydrates and/or
as tryptophan. Acid heat treatments, mainly in the presence of lipids. They are obtained from al.animal, plant or microbial sources and
oxygen, produce the degradation of tryptophan (Cuq and others may consist of whole cells, parts of cells, or cell free extracts of the source
1983). Thus, enzymatic hydrolysis by pronase from Streptomyces used. They may contain one or more active components as well as car-
griseus has been applied to determine the amount of tryptophan riers, solvents, preservatives, antioxidants and other substances consistent
in a sample, but the process did not achieve the full release of with good manufacturing practice. They may be liquid, semi liquid, dry
this amino acid. This has caused alkaline hydrolysis to remain as or in an immobilized form (immobilized enzyme preparations are prepa-
the most utilized alternative protocol (Yamskov and others 1986; rations which have been made insoluble in their intended food matrix by
Delhave 1992; Fountoulakis and Lahm 1998; Weiss and others physical and/or chemical means)” (FAO 2017). And later, regarding
1998; Masuda and Dohmae 2010). to microbial sources, “Microbial sources used in the production of en-
zyme preparations may be native strains or variants of microorganisms,
Protease Applications or be derived from native strains or variants by the processes of selective
As recently reviewed, protein hydrolysis finds a broad variety of serial culture or genetic modification. Production strains for food enzyme
applications on diverse biotechnology processes (Tavano 2013). A preparations must be non-pathogenic and non-toxigenic . . . ”. Protease
small summary was sketched in Figure 3. New protease industrial samples may be used as “food additives” if they are approved by
processes are continually being presented. The increase in hydrol- the U.S. FDA for specific uses and considered GRAS (generally
ysis specificity and product purity, while reducing environmental recognized as safe) substances. A substance may be GRAS only
impact, and especially when it comes to food production (Tavano if its general recognition on safety is founded on the opinions of
2013), compared positively to proteases in chemical processes. experts considered to be qualified to evaluate the safety of the
Some other protease applications will be discussed below. substance (Food and Agriculture Organization 2017).

Food biotechnology Health-related properties of proteins


Diverse biotechnological techniques may be used in food man- Diverse special diets can be calculated to offer some specific
ufacture in a very wide sense, from enhancement protocols, related protein nutritional requirements or even supplement nutritional
to planting or breeding, to modifications of specific stages of pro- necessities or generate health benefits. In particular instances, the
cessing, either to improve food quality or to replace old processes protein resource may come from combinations of free amino acids
with a high negative environmental impact (Stover and Mehta or even a blend of both small peptides and amino acids (Clemente
2017). 2000). This might be alternatively performed by the use of un-
Food products are very complex and contain diverse matri- modified protein supplements. Both free amino acids and peptides
ces presenting different compositions that include diverse kinds can be absorbed; however, short-chain peptides are frequently fa-
of constituents. All components are interacting among them, re- vored due their enhanced absorption kinetics (Jahan-Mihan and
sulting in the specific features of the final food. Among these others 2011). Moreover, as described by Clemente (2000), protein
constituents, peptides and proteins contained in the food medium hydrolysates achieved by enzymatic treatments and composed of
take an outstanding position (Lacou and others 2015). Proteins peptides with specific features and molecular size are demanded
play crucial roles in those aspects involved in the bio- and techno- for specific preparations. These features of the hydrolysates will
functional features and/or nutritional value of foods (Lacou and result from the protease choice and the procedure design. Thus,
others 2015; Wouters and others 2016). The hydrolysis of these in some instances, when the patient needs a general supply of
proteins affects the food matrix properties, which may produce amino acids via protein hydrolysates, a high hydrolysis percent-
positive effects such as modifications of sensory quality (such as age of the protein hydrolysis can be required (Clemente 2000).
texture or flavor), enhanced digestibility, decreased allergenicity, This may be achieved by employing proteases with a broad speci-
or liberation of bioactive peptides (Henzel and others 2003; Chen ficity, using a mix of diverse enzymes, or carrying out a step-by-
2008; Lacou and others 2015). Changes of chemical processes by step hydrolysis of the protein utilizing a consecutive proteolysis
enzymatic hydrolysis processes is an attractive option as enzymatic employing different proteases in each hydrolysis step (Boutrou and
treatments fully maintain the chemical species existing in the food others 2013). In other cases, a specific peptide is the goal of the
sample. The acid protein hydrolysis onto the food will affect most hydrolysate preparation (a bioactive peptide, for example) or even
constituents of the food matrix and/or will generate compounds a specific breakage of a single peptide bond (such as hypoallergenic


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Proteases in food technology . . .

Figure 3–Schematic representation of potential applications of proteases.

formulas). These instances usually need to select the most suitable to a given food” (Sicherer and Sampson 2014), including both
protease with the proper narrow specificity. IgE-mediated and non–IgE mediated allergenic reactions (Berin
Nowadays, the employment of dietary complements based on 2015). When food protein illnesses are intermediated by IgE the
protein hydrolysates has already gone beyond the bounds of protein percentage of the protein recognized by IgE is named the epi-
intake to patients who could not assimilate native proteins because tope, which can be “sequential” or “linear,” depending on the
of illness, such as Crohn’s disease or pancreatitis (Posovszky 2016).tridimensional or the primary structures of the allergenic protein,
For instance, the utilization of protein hydrolysates in sports nu- respectively. The conformational epitopes are more easily broken
trition has improved its importance, with uncountable research by food processes, such as, thermal treatment, but for the linear
studies showing their efficacy in helping in the recovery of the epitopes these treatments may not be sufficient. The hydrolysis of
muscle connective tissue matrix after exercise (Holm and others the protein chain may be the only way to prevent the identification
2017). Moreover, these supplements present an insulinotrophic of the epitope by the immunological response system (Martins and
effect, which causes a muscle anabolic result (Yuan and others Galeazzi 1996; Sicherer 2002; Sathe and Sharma 2009). A proper
2017), specially those hydrolysates with a high concentration of selection of a protease with the desired specificity and proper hy-
Leu (Rittiga and others 2017). However, researchers point out drolysis protocol can radically decrease protein allergenicity. This
the difficulty in defining or isolating the actual cause for some will depend on the percentage of protein hydrolysis and even on
benefits produced by the consumption of protein hydrolysates. the filtration protocols used in the final purification to discard
The combination of several effects would be the most accepted remaining unmodified proteins. The ideal process should imply a
justification, since these peptides would couple their nutritional minimum amount of downstream steps (Burton and others 2002).
effects to other “bioactivities,” an area of study which has receivedThus, well-performed proteolyses have been utilized to decrease
increasing attention nowadays (Thomson and others 2015; Holm the allergenicity of milk proteins or gluten in foods (Rizzello and
and others 2017). others 2007; Osborn and others 2017). The selection of the en-
zyme and the extent of hydrolysis that is necessary to get the desired
Reduction of food protein allergy effect require deep attention. A poor design of the process can
Food allergy is defined as “an adverse health effect arising from produce the opposite effect. If a low percentage of hydrolysis
a specific immune response that occurs reproducibly on exposure is achieved and only a superficial hydrolysis is attained, this can

416 Comprehensive Reviews in Food Science and Food Safety r Vol. 17, 2018 
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Proteases in food technology . . .

increase the allergenic reactivity of the protein by revealing epi- the first 4 months of life of high-risk children is coupled with an
topes previously hidden in the core of the protein structure. A effect that avoids the allergic reaction at the moment of consump-
study performed by Panda and others (2015) confirmed that the tion. This study showed that this treatment also presented eczema
hydrolysis of soybean protein isolate (SPI) by chymotrypsin or development until the children reached 15 years. Children who
bromelain amplified the food allergenicity as measured by IgE im- were frequent users of casein hydrolysate presented a decreased
munoblots. Cabanillas and others (2012) showed a 65% reduction probability of becoming asthmatic between the age of 11 and 15
in IgE reactivity for roasted peanut protein when hydrolyzing for years. The same study showed the problems for establishing precise
300 min using Flavourzyme, while a 30-min treatment produced explanations on these hydrolysates’ positive effects and strength-
an augmentation in IgE reactivity when measured using ELISA. ened the hypothesis that the hydrolysis of allergenic epitopes is not
Using Alcalase as catalyst, a vanishing of IgE reactivity was appre- the only positive effect from consuming a protein hydrolysate, be-
ciated after that treatment. cause each kind of hydrolysate (depending on the protein source
Depending on the percentage of protein hydrolysis, the products and enzyme treatment used) may produce diverse side-effects.
may be named as extensively hydrolyzed formulas (small oligopep- It is likely that the exact kind and percentage of peptides, now
tides) and partially hydrolyzed formulas (where about 90% of the known already with possible bioactivity, can also produce extra
peptides present a molecular weight <3 kDa) with clear alterations benefits.
in the allergenic features (Vandenplas and others 2014; Berin 2015) Consumption of gluten from any Triticum species or similar
and even acceptance responses, since a very high hydrolysis de- proteins of rye or barley, and their crossbred varieties, can severely
gree can alter the product taste, as discussed below. For example, distress genetically predisposed individuals to inflammatory illness
Meinlschmidt and others (2016) showed, also with hydrolysis of of the small intestine (Rizzello and others 2007). Celiac and non-
soy protein isolate, that pepsin, alcalase and papain hydrolyses were celiac gluten sensitive patients show a small intestinal enteropathy
suitable in the destruction of the main soybean allergens. How- presenting villous atrophy, a chronic inflammation of intestinal
ever this treatment amplified the bitterness of the hydrolysates. lamina propria, a compromised epithelial barrier and augmented
Although, alcalase showed the highest efficiency in the hydrolysis epithelial permeability (Rizzello and others 2007). In celiac pa-
(13% hydrolysis), papain and Flavourzyme were more useful be- tients, dietary gluten activates production of anti-gliadin antibod-
cause of the production of a less marked bitter taste (Meinlschmidt ies and anti-transglutaminase 2. Only the anti-gliadin antibodies
and others 2016). are produced in non-celiac gluten-sensitive individuals. Gluten
Soy protein extract exhibits at least 16 IgE-binding proteins proteins exhibit 2 main portions: soluble (gliadins) and insoluble
with molecular weights ranging from 7.5 to 97 kDa, which may (glutenins) aqueous alcohol portions (Matysiak–Budnik and oth-
be implicated in allergy of soy derivatives (Cordle 2004). There- ers 2005; Stepniak and others 2006; Sestak and Fortgang 2013).
fore, substantial research efforts are intended at modulating soy Nowadays, the only actual treatment for celiac disease is a gluten-
allergenicity and checking enzymatic protocols to diminish soy free diet (Rizzello and others 2007). The high amount of proline
allergenic reactivity. residues in gluten (12 to 17% of all amino acids) produces that
Pepsin and trypsin were utilized to alter other legume protein this protein is resistant to full proteolytic degradation by human
allergenicities (Pinto and others 2009). The allergenic effects were pancreatic and gastric proteases, which cause interest among the
significantly different when employing different protein extracts, researchers who intended to use nondigestive proteases for gluten
like chickpea, lentil, or sweet lupin proteins. Lentil and chickpea hydrolysis (Matysiak–Budnik and others 2005; Stepniak and others
proteins lost their immunogenic effects after a few minutes of en- 2006; Sestak and Fortgang 2013). Ehren and others (2009) eval-
zyme treatment, while the diminution of the antigenic activity of uated the gluten detoxification features of 2 food-grade enzymes,
the major globulin protein from sweet lupin was slowly decreased dipeptidyl peptidase IV (DPPIV) from Aspergillus oryzae and as-
and needed longer hydrolysis treatment. The antigenic epitopes pergillopepsin (ASP) from Aspergillus niger. Used individually, nei-
existing in the hydrolysate were fully degraded after 30 min by ther ASP nor DPPIV efficiently broke immunotoxic gluten epi-
trypsin hydrolysis, while if pepsin was used, it still exhibited about topes. However, the joint utilization of DPPIV and ASP permitted
23% of the initial antigenicity (Pinto and others 2009). In many the detoxification of moderate quantities of gluten, even when an
examples, a large variety of different allergen peptides can be found excess of casein was presented, or in whole-wheat bread. Rizzello
in a single food. and others (2007) used a combination of sourdough lactobacilli
Many studies have shown the effectiveness of well-performed and fungal proteases to remove the toxicity of wheat flour during
hydrolyses in the production of protein hydrolysates with a po- long-time fermentation, and they suggested that this process was
tential utilization in the diet of human beings, (especially chil- an efficient approach to eliminate gluten toxicity. Other studies an-
dren) suffering from food allergy (Osborn and others 2017). Cow, alyzed the utilization of prolyl endoproteases from Aspergillus niger
peanut, eggs, soy, wheat, and especially milk proteins are the most for this goal (Matysiak–Budnik and others 2005; Stepniak and
important food allergens for young children. Milk proteins can others 2006; Sestak and Fortgang 2013). It has been previously
produce allergic reactions due to the 3 main proteins presented: stated that in some instances a single protease cannot produce the
α-lactalbumin, β-lactoglobulin, and caseins (Sharma and others required degree of hydrolysis. Li and others (2016) employed a se-
2001). A recent study of The Cochrane Library (Osborn and quential protein hydrolysis, which enabled allergenicity decrease.
others 2017) shows that, among children at high risk of allergy Sequential-hydrolysis of wheat flour by alcalase and papain was
who cannot be breast-fed, the continued supplementation with found more efficient in decreasing the amount of detectable gliadin
a hydrolyzed protein formula decreases the danger of infant cow than every individual enzyme hydrolysis. Under optimal condi-
milk allergy and development of infant allergy compared with the tions of sequential enzymatic hydrolysis, gliadin was almost com-
utilization of a cow milk formula. pletely destroyed. This gave a flour extract showing better decrased
von Berg and others (2016) gave indications that the utiliza- allergenic effects than the hydrolyzate obtained with individual hy-
tion of some hydrolysate formulas as breastmilk replacements in drolysis using chymotrypsin, Flavourzyme, trypsin, or pepsin.


C 2018 Institute of Food Technologists® Vol. 17, 2018 r Comprehensive Reviews in Food Science and Food Safety 417
Proteases in food technology . . .

The features of the amino acids that form the peptides present
great relevance to determine the potential bioactivity of the pep-
tide, together with using a protease with the required specificity.
Therefore, the proper selection of the substrate-protein will also be
critical on the final features of the produced peptides (Amarowicz
2008; Tavano 2013). Therefore, the selection of the protein sub-
strate source will determine the characteristics of the final peptide
hydrolysate (after their controlled proteolysis). As it is evident,
even though the same enzyme is used in the process of produc-
tion of these peptides, they will be different depending on the
composition of the substrate protein (Tavano 2013).
Another relevant consideration is that the produced hydrolysate
will be composed of a mixture of amino acids and many different
peptides. This library of peptides often exhibits many bioactivi-
ties. Even a single peptide may have several potential bioactivities.
Neves and others (2017) showed that the hydrolysates produced by
hydrolysis of salmon trimming proteins catalyzed by Corolase PP
Figure 4–Schematic representation of different pathways for bioactive have both DPP-IV and ACE antioxidant capacities and inhibition
peptides release. activities. Vij and others (2016) presented that an isolated peptide
derived from casein hydrolysates (Val-Leu-Pro-Val-Pro-Gln-Lys)
presented both ACE inhibition and antioxidant capacities, together
Improvement of bio-functional properties with a demonstrated effect in transepithelial transport that enabled
Liberation of bioactive peptides. Peptides are capable of exert- its assimilation.
ing a positive effect on body functions beyond those tradition-
ally recognized nutritional functions, giving extra health effects Antihypertensive peptides
(Kris-Etherton and others 2002; Kitts and Weiler 2003; Biesalski Some peptides present antihypertensive activity, in many in-
and others 2009) such as beneficial impacts on the digestive, im- stances by inhibiting angiotensin-I-converting enzyme (ACE).
mune, cardiovascular, or nervous systems (Figure 4). These helpful This is a peptidyldipeptide hydrolase coupled to the renin-
effects of peptides are influenced by their sequence and amino acid angiotensin system which is very relevant in the regulation of
composition (Sirtori and others 2009; Hernández-Ledesma and the cardiovascular function and blood pressure. The ACE inhi-
others 2011; Arroume and others 2016). Together with the fea- bition produces the decreasing of blood pressure (Izzo and Weir
tures that render these bioactivities, food peptides (those ingested 2011). Several studies have shown the ACE-inhibitory properties
through the diet) must also exhibit some extra features, such as of diverse peptides (ranging from 2 to 12 amino acids) consti-
the capacity of being absorbed (possibility of its transport through tuted by many hydrophobic or cationic (such as Lys and Arg)
intestinal cells) and resistance to digestive proteolysis (Vij and oth- amino acids at the C-terminal positions (Schmelzer and oth-
ers 2016). Many peptides fulfill these preconditions as bioactive ers 2007; Hernández-Ledesma and others 2011). Considering
compounds and therefore they may present likely utilities as nu- that pepsin possesses preferential specificity towards hydropho-
traceuticals. Together with improving animal or human health, bic residues and trypsin preferential activity in Arg- and Lys- at
these peptides are potential natural additives for food. This is be- P1, both enzymes have been successfully utilized in the produc-
cause some of their action mechanisms as bioactive compounds can tion of peptides with antihypertensive properties using milk pro-
have positive effects in the food matrix itself (Li-Chan 2015). An- tein as substrate (Mullally and others 1997). Ferreira and others
tioxidant or antimicrobial peptides, for example, may apply their (2007) demonstrated that Ala-Leu-Pro-Met-His-Ile-Arg peptide,
function in food, with direct positive effects on its preservation. achieved after β-lactoglobulin hydrolysis catalyzed by trypsin, had
Although the connection between the peptide structures and strong ACE-inhibition power. Ko and others (2017) determined
their activities is not completely understood, several studies have the sequence of the peptides achieved after hydrolyzing the marine
detected some features that favor the bioactive properties of pep- sponge Stylotella aurantium which presented ACE inhibitory activ-
tides. These include amino acid sequence, size, presence or absence ity. Two dipeptides were purified and identified: Tyr-Arg (337.2
of specific amino acids in particular locations, and so on. Some Da) and Ile-Arg (287.2 Da). Wang and others (2017) established
of these peptide properties can be achieved by the right selection the ACE inhibition potential of Tyr-Ser-Lys obtained after trypsin
of the enzymatic protocol that is employed to produce these pep- hydrolysis of rice bran protein. However, peptides presenting
tides. That is, a proper selection of the protease and an adequate very diverse sequences behave as ACE inhibitors. Abdelhedia and
control of the hydrolysis process is required (Ambroggio and oth- others (2017) showed that Pro-Thr-Val-Pro-Lys-Arg-Pro-Ser-
ers 2016). Although the most usual way to manufacture bioactive Pro-Thr, Pro-Leu-Pro-Lys-Arg-Glu, Val-Val-Pro-Phe-Glu-Gly-
peptides is via protein hydrolysis using microbial fermentation or Ala-Val, and Ile-Ala-Gly-Pro-Pro-Gly-Ser-Ala-Gly-Pro-Ala-Gly,
R 
natural digestive procedures, many in vitro enzymatic methods have peptides achieved by Esperase catalyzed hydrolysis of smooth-
been suggested (Korhonen and Pihlanto 2006; Agyei and Danquah hound viscera proteins, were capable of inhibiting ACE through
2011; Hernandez-Ledesma and others 2011). Actually, bearing in a complex net of interactions involving hydrogen bonds, hy-
mind that diverse enzymes can originate peptides with a broad drophobic, electrostatic, and van der Waals. Other studies also
range of effects, non-digestive proteases, such as Thermolysin or suggested ACE-inhibitory activities of peptides with a proline
Alcalase, have been utilized for the production of peptides that dif- element at the carboxyl terminal. However, as proline is re-
fer from those released by human digestion, studying their possible sistant to digestive proteases (Li and others 2004; Korhonen
bioactivity activities. and Pihlanto 2006), the release of these peptides requires to be

418 Comprehensive Reviews in Food Science and Food Safety r Vol. 17, 2018 
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Proteases in food technology . . .

catalyzed using alternative proteases as biocatalysts in the protein tic acceptance. This was because the Alcalase product was much
hydrolysis. more bitter. This showed the requirement for cautious selection
of the enzyme.
Antioxidant peptides
Free radicals can be produced in vivo through standard reactions Other bioactive peptides
or by ingestion/absorption of substances, present in the environ- Many other possible “bioactivities” may be found in the liter-
ment or diet, which may become oxidizing reagents. The excess ature. Guo and others (2017) established the anti-fatigue activity
of these radicals can produce negative effects on human health: for of peptides obtained after papain hydrolysis of sea horse protein
example, damage in proteins, oxidation of low-density lipoproteins extract. Sabbione and others (2016) showed the antithrombotic
in membranes, or DNA mutations (Bahareh and others 2010). activity of amaranth protein produced after imitation of gastroin-
Several reports show that peptides can present antioxidant testinal digestion, and they also detected that various peptides are
power, even though the exact mechanism is still not properly capable to cross the Caco2-TC7 cell monolayer. Alamdari and
understood. It has been speculated to be mainly due to inhibition Ehsani (2017) underlined the antimicrobial peptides obtained by
of singlet oxygen-quenching potential, harmful lipid oxidation, hydrolysis of milk proteins using digestive proteases or by lactic
free radical-scavenging, or chelation of metal ions (Erdmann and acid bacteria fermentation.
others 2008; Hernandez and others 2012). It is assumed that the Opioid peptides presented their biological activity by coupling
peptide antioxidant effects may be related to a sum of different to opioid receptors, presenting an opiate-like effect. A ‘‘typical’’
peptide features, like the presence of electron-donating amino opioid peptide from milk proteins is the peptide Tyr-Gly-Gly-Phe
acid moieties in the peptide sequence or the existence of several produced via cheese fermentation. The presence of the tyrosine
hydrogen atoms (Samaranayaka and Li-Chan 2011). Because of the residue at the N-terminus and another aromatic amino acid at the
diverse physicochemical features of amino acids, the antioxidant fourth position are critical aspects for this effect, as they enable
abilities of peptides are associated with the occurrence of certain the peptide coupling with the opioid receptor (Silva and Malcata
groups in the peptide sequence, especially methionine, histidine, 2005).
tyrosine, proline, or tryptophan. Peptides containing hydrophobic The enzyme dipeptidyl peptidase IV (DPP-IV) is involved in
amino acids (such as Leu or Val at the N-terminus) seem to be the regulation of serum glucose in humans. Its inhibitors can be
more suitable to have significant antioxidant activity in vivo ow- utilized in type 2 diabetes treatment as antidiabetic drugs (Lacroix
ing to enhanced accessibility to hydrophobic substances like fatty and others 2017). Many peptides present potential as inhibitors
acids (Amarowicz 2008). Thus, it is obvious that, again, in the in- of DPP-IV. Nongonierma and others (2017) produced inhibitor
stance of the antioxidant effects of the protein hydrolysates depend peptides by bovine milk protein hydrolysis catalyzed by trypsin.
on: the utilized protease, the protein used as substrate, and/or the Many researches have shown the bioactive potential of milk pro-
design of process (Amarowicz 2008). teins and their proteolyzed peptides, but it is essential to measure
Guo and others (2017) presented that sea horse proteins hy- the actual activity of the peptides in vivo and not only in vitro.
drolyzed by papain gave a mixture of peptides that presented For example, Lacroix and others (2017) showed that milk protein-
enhanced antioxidant power compared to those produced using derived DPP-IV inhibitors may be hydrolyzed by intestinal brush
Flavourzyme or trypsin. Moreover, they showed that the hydrol- border membrane peptidases and have low permeability. These
ysis grade is a significant parameter to regulate the antioxidant facts decrease their potential for action in vivo, becoming a nice
potential of the peptides. This antioxidant activity was higher after example of the necessity of also considering peptide stability and
40 min of papain hydrolysis than after 120 min. Therefore, for bioavailability when evaluating bioactivities.
some uses, producing large peptide fragments through controlled
hydrolysis may be a key factor. Modulating the techno-functional properties of foods
As discussed above, some peptides may present activities that Proteins can fulfill diverse non-nutritional functions in food
make them interesting as food additives. This is the case of antiox- products because of their physicochemical features which deter-
idant peptides. Antioxidants are usually added to foods to delay mine the performance of proteins in a food matrix on medium,
lipid peroxidation and also to prevent the production of com- determining relevant “techno-functional” features of the foods,
pounds resulting from food oxidation. This can bring unwanted such as protein capacity for gelation, foam formation, or emulsi-
alterations in texture, color, or flavor of the foods (Samaranayaka fying, as well as solubility and fat or water uptake (Kinsella and
and Li-Chan 2011). Addition of these compounds to the food is Melachouris 1976; Panyam and Kilara 1996; Foegeding and Davis
necessary. However, not only should their antioxidant activity be 2011; Wouters and others 2016). Functional features of proteins
taken into account, but also their effects on the fabrication pro- come from an equilibrium between the native 3-dimensional
cess. Moreover, the sensory features should be considered in the structure of a protein and the continuous structural conforma-
final product, since some peptides may have a bitter taste, as we tional transitions. This last is clearly modulated by forces such
will discuss in depth later. For example, in a study presented by as hydrophobic or ionic interactions. These can alter the different
Yarnpakdee and others (2015), where Nile tilapia protein was hy- protein conformational forms. This conformational equilibrium is
drolyzed by Protamex, Flavourzyme, Alcalase, or papain, the final frequently coupled to alterations in the secondary or tertiary struc-
product presented an augmented antioxidant activity as the grade ture of proteins, and with its surface-activity relationship (Foeged-
of hydrolysis increased. Peptides released by Alcalase or papain pos- ing and Davis 2011; Wouters and others 2016). Proteolysis of
sessed the strongest metal-chelating and ABTS radical-scavenging proteins is a potent instrument in the alteration of these techno-
activities. Both peptide extracts presented a high amount of hy- functional features of proteins. This can alter 3 relevant issues in this
drophobic amino acids and had lysine, glutamic acid/glutamine, balance: it reduces the protein molecular weight; it augments the
and aspartic acid/asparagine as the dominant amino acids. Al- global number of ionizable groups in the medium (by the release
though the Alcalase hydrolysate was the highest in antioxidant ac- of a greater number of protein chain terminal groups proportional
tivity, the papain hydrolysate was the one with the best organolep- to the number of broken peptide bonds); and can produce the


C 2018 Institute of Food Technologists® Vol. 17, 2018 r Comprehensive Reviews in Food Science and Food Safety 419
Proteases in food technology . . .

exposure of hydrophobic groups from the core of the protein hydrolysates are utilized. Peptides and amino acids, along with
structure. This ultimately produces different alterations in these other molecules like sugars or salts, determine the taste sensation
protein environment interactions. These effects will be clearly de- of foods. The human gustatory system can detect 5 basic flavors:
termined by the degree of protein hydrolysis. However, although salty, sour, bitter, sweet, and umami. The last 3 tastes are the ma-
the alterations in the protein techno-functional properties induced jor ones related to peptides (Iwaniak and others 2016). Bitter taste
by proteolysis are the consequence of these main parameters, they warrants special care, because this can be a cause for product rejec-
also depend on the environmental conditions and the hydrolysis tion. This may be an adaptive evolution of mammals for avoiding
conditions (especially the protease used and extent of the hydroly- foods that are potentially toxic, which have a bitter taste in many
sis performed). The proteins are transformed into a peptide extract instances (Glendinning 1994). The flavor of peptides can change
containing different percentages of peptides of diverse dimensions, depending on the amino acid sequence of their constituents. Stud-
free amino acids, and even still intact native protein molecules. In ies have shown an association between bitter flavor of the peptides
this new condition, depending on the initial medium pH, for ex- and their chain length. The bitterness of peptides augments if they
ample, the released carboxyl and amino terminal groups may be are formed by up to 8 amino acid groups. Moreover this is in-
in their dissociated or protonated forms, which alters the protein fluenced by its overall hydrophobicity and the specific amino acid
interactions with the medium and may even change the global located at the N- and C-terminus. For example, if tyrosine or
pH value of the food. Hydrolysis conditions need to be properly phenylalanine are in any terminus position, they can determine
determined to prevent the consequences of a bad protocol design bitter taste (Saha and Hayashi 2001; Maehashia and Huang 2009;
that can damage the protein functionality and even produce dis- Iwaniak and others 2016). Hence, the right protease selection to
approving sensory effects, such as accumulation of bitter-flavored perform the protein extract hydrolysis can decrease disagreeable
peptides (Jung and others 2005). It is a requirement to avoid that flavor in the final product and even produce peptides with desir-
the intended technological effects can harm the sensory features able tastes. For example, during cheese manufacture and ripening,
of the food, which is an important challenge in food processing. a gradual proteolysis is usually considered to be a requirement for
Many food constituents, such as amino acids and peptides, can the development of the right flavor of some cheeses (notably Brie
contribute to the final sensory-specific food features, such as the or Camembert) (Engel and others 2001; Singh and others 2003).
texture, shape, color, or taste (Rolls 1982). In fact, proteolysis is present during the main biochemical alter-
Protein solubility is determined by electrostatic and hydrophilic ations in cheese-making, bearing in mind that in most cases, the
interactions, and the enhancement of protein solubility is the most first step is an enzymatic coagulation. Later, the ripening cheese
remarkable property on protein techno-functional features after will see a sequential transformation of flavor and texture, to some
the hydrolysis process (Panyam and Kilara 1996). It is usually pro- extent determined by the hydrolysis ratio during the ripening
portional to the growth in the new ionizable amino and car- process (Fox 1989). For many cheeses, proteolysis is not limited
boxyl terminus groups produced after the protein hydrolysis of to the action of external added enzymes, but also to enzymes of
peptide bonds (Wouters and others 2016). However, the hydrol- microorganisms. It occurs in the blue-veined cheeses, where blue
ysis step requires to be controlled, because this treatment also molds produce a typical odor and flavor via the transformations
exposes hydrophobic moieties initially hidden inside the protein catalyzed by their enzymes. The same occurs at the moldy surfaces
core. This increases peptide attractions/aggregation interactions of cheeses such as Camembert and Brie (Sousa and others 2001;
producing a decrease in solubility. A high grade of hydrophobicity Seratlic and others 2011).
and sulfhydryl disulfide interactions increases protein insolubility, Umami taste (as the one induced by monosodium L-glutamate)
even after a high percentage of hydrolysis (Creusot and others has been broadly accepted as the fifth basic kind of taste and is
2006; Paraman and others 2007; Creusot and Gruppen 2008). called broth-like, meaty, or savory taste. It is coupled to the taste
However, the optimal grade of hydrolysis is determined by the characteristics and the chemical structure of L-glutamyl oligopep-
final goal. For instance, a high hydrolysis grade may have nega- tides (Zhang and others 2017). The presence of glutamic acid in
tive effects on protein solubility. However, the exposition of hy- di- or tripeptides was strongly associated with umami taste (Iwa-
drophobic groups augments the hydrophobic surface, which can niak and others 2016), since it was described that the anionic
be favorable if the peptide extract is going to be used as an emul- L-glutamyl oligopeptides might present a umami taste (Zhang and
sifier (Panyam and Kilara 1996). In some examples, the highest others 2017). Soy sauce is characterized by its strong and dis-
emulsification capability has been achieved with a low hydrolysis tinct umami taste, which is produced via fermentation hydrolysis
percentage of the protein, and an augmentation in the accessibil- of soy proteins. Zhuang and others (2016) showed the relevant
ity of large hydrophobic peptide units at the oil–water interface, role of peptides in the umami taste of soy sauce and that the
promoting better emulsion formation (Panyam and Kilara 1996). amino acid sequences of the peptides responsible for the umami
Although proteolysis can decrease gelling properties, because of taste in this product were Glu-Gln-Gln-Gln-Gln, Ala-Gln-Ala-
the small size of the products, low grades of hydrolysis can also Leu-Gln-Ala-Gln-Ala, Leu-Pro-Glu-Glu-Val, Ala-Leu-Pro-Glu-
enhance the protein gelling properties. Enhanced gelation features Glu-Val, and Glu-Ala-Gly-Ile-Gln, with the presence of glutamic
and a higher foaming capacity of protein extracts were described acid/glutamine persistent. Yu and others (2017) recognized the
when the protein hydrolysis was performed during a short time umami hexapeptides from Takifugu obscurus as Lys-Gly-Arg-Tyr-
period (Sanchez and Burgos 1996; Totosaus and others 2002). Glu-Arg.
Protein gelation requires coupling between protein molecules; in Feed biotechnology. The relevance of feed proteases is increas-
many instances after the unfolding of the native protein structure, ing and these enzymes can supplement animal feedstocks to en-
and in this way gelation needs large peptides. hance nutrient bioavailability of the food constituents or as an
Wouters and others (2016) described that the impact of the element in an animal diet formulation to help protein digestion in
flavor and odor of the protein constituents cannot be ignored the gastrointestinal tract (Pariza and Cook 2010). Sucu and others
when these are utilized in food technology looking for their tech- (2014) studied the influence of a supplemental dietary mixture
nological features. This fact should be further reinforced when of different proteases in granular form (a cysteine protease and a

420 Comprehensive Reviews in Food Science and Food Safety r Vol. 17, 2018 
C 2018 Institute of Food Technologists®
Proteases in food technology . . .

serine endopeptidase of the subtilisin family - 3.4.22.2 and EC Improving Proteases for Biotechnology Applications
3.4.21.62, respectively) on the productivity variables in dairy cat- As previously discussed, the utility of proteases depends on di-
tle, using as a model lactating Holstein cows. The outcome of the verse points that comprise the selection of the most suitable en-
experiment showed that supplemental protease enhances milk and zyme, bearing in mind its specificity, activity, and stability in the
meat production effectiveness and enhances parameters of nitro- food medium (pH, process temperature). Thus, in some instances
gen status. The utilization of a novel serine protease, expressed the search for new enzymes that work under extreme conditions is
in Bacillus licheniformis (RONOZYME ProAct) as feed protease, required, even the genetic modification of the enzyme to get spe-
permitted a significant augmentation in the degree of the hydroly- cific features may become necessary (Tavano 2013). Some other
sis, solubilization, and digestibility of proteins (Fru-Nji and others strategies are being evaluated to get an even better behavior of en-
2011), improving broiler performance by enhancing protein and zymes, including the exploration for less known functions. These
energy digestibility. The use of a mixture of enzymes containing include the knowledge of the parameters that influence the be-
lipases and proteases during the feather hydrolysis process may en- havior of the enzyme in a specific process. Among them, we can
hance the energetic properties of the feather meal when added in remark the protein structural limitations or performance under
diets for adult dogs (Faria and others 2016). the conditions of the medium, or even know the details intrinsic
Proteolysis during the natural ensiling processes happened be- to the process that can be overcome, such as the solubility of the
cause of microbial and plant proteases and it can enhance the enzyme in the medium that makes its separation and/or recovery
nutritional features of the final product, augmenting the availabil- and reuse very complex.
ity of many nutrients. Proteases are not only adequate to enhance Like any other enzyme or protein, protease chain integrity is
the use of protein in the foods, but they also enhance starch diges- necessary to maintain their functions (Wang and others 2009;
tion (Young and others 2012). The destruction of the food matrix McGeagh and others 2011; Talbert and Goddard 2012). Many
may benefit the digestion of other “digestive enzyme-dependent” parameters simultaneously determine the protein stability: helix
constituents. Windle and others (2014) studied the effects of the dipole interactions, loop tension, ionic interactions, the entropy
addition of a protease from Aspergillus niger with a low pH opti- of water, salt bridges, planarity of conjugated systems, pi–pi stack-
mum activity (around pH 3.0) to corn plants gathered at diverse ing, torsion potentials, hydrogen bonds, bond stretching, van der
silage fermentation degrees, using 20 mg or 2,000 mg of pro- Waals forces, and disulfide bridges (Eijsink and others 2004). Dras-
tease/kg of wet forage. The results showed that the concentration tic conditions of handling or temperature, or pH value changes
of soluble proteins augmented with time of ensiling on protease during processing, can produce alterations in the enzyme con-
presence. The treatment of corn plants with the higher protease formation and lead to important functional alterations (Wang and
amount increases the proteolysis during ensiling, yielding in vitro others 2009; McGeagh and others 2011; Talbert and Goddard
starch digestibility results after 45 days of ensiling. Similar results 2012). Moreover, since the protein chain of a protease molecule
required 150 days of ensiling in untreated corn silages (Windle and may be the substrate of other protease molecules, proteases can
others 2014). present autolysis as an additional and particular problem to be
In all these uses of proteases, they must have features that make solved in the design of biocatalysts. This may reach special rele-
it resilient to the medium to which they will be exposed, such vance during protease storage or when the sample cannot be con-
as the presence of proteases in the cow rumen or drastic pH taminated by chain protein fragments from the protease, for exam-
values (Morgavi and others 2001). The environment of the silage ple in samples utilized for mass spectrometry (Gobom and others
is commonly acidic, the pH ranging between 3.8 and 4.8 (Young 1997).
and others 2012). The performance of proteases may be enhanced by either phys-
Non-food applications. Cleaning solutions with a broad range ical procedures or chemical modifications. The use of ultrasounds
of uses may also incorporate proteases. They are utilized in clean- in reactions catalyzed by proteases has presented some positive ef-
ers to eliminate silver from X-ray and photographic films and fects in some instances (Trieu-Cuot and Gripon 1982; Seratlić and
also to clean surgical instruments or contact lenses, laundry, or be others 2011). Chemical methods comprise alterations in amino
included in detergent formulations for industrial uses. They are acid side chains with reactive functional moieties which can react
particularly utilized in the cleaning of material employed in food with chemicals by intra- or/and intermolecular cross-linking or
industrial processes (such as meat or milk industries), where the covalent coupling (Fágáin 1995). This aims to enhance protein c
equipment will directly contact the product. In these instances, a stability and/or enzyme activity via reduction of enzyme surface
classical chemical cleaning protocol becomes risky if the chem- flexibility and decreasing protein unfolding or subunit dissociation
ical compound is incorporated into the food (Jian and others (in oligomeric enzymes) (Fernandez-Lafuente 2009). In some in-
2011). Some features are required for a protease to be used as stances, the alterations may improve the resistance agaist chemical
detergent additive, such as stability against surfactants, activity and reagents or inhibitors, or reduce autolysis (Mateo and others 2007;
stability in alkaline pH, high water solubility, and a very wide Rueda and others 2016). Different compounds have been utilized
specificity that enables to digest diverse proteins (Ma and others for chemical modification of diverse enzymes, such as succinic
2011). Thus, alkaline proteases are the most suitable for this appli- anhydride, which reacts specifically with the ε-amino groups of
cation. the side chain of lysine residues or the terminus NH2 and alter the
Proteases are also utilized in pharmaceutical uses. For example, ionic nature of the group from cationic to anionic. Glutaraldehyde
they may be used in the digestion of keratinized skin. The thick crosslinking has been utilized to stabilize enzymes by introducing
layer of dead skin and the keratin that constitutes a high percentage intermolecular bonds (Barbosa and others 2014). The covalent
of corns may be degraded by proteases, augmenting its solubility immobilization of caboxymethylcellulose to the protein surface,
and making regenerating epithelia and the elimination of the scar via reductive alkylation with NaBH4 , enhanced enzyme pH and
simpler, and helping in the healing processes. Keratinase-based thermal stabilities (Villalonga and others 2000). In addition to
cosmetic products are efficient in the reduction or elimination of these chemical modifications of the enzyme chains, protease im-
corns and calluses (Gupta and others 2013; Singh and others 2016). mobilization techniques may add some advantages (Garcia-Galan


C 2018 Institute of Food Technologists® Vol. 17, 2018 r Comprehensive Reviews in Food Science and Food Safety 421
Proteases in food technology . . .

and others 2011). We will discuss in more detail this aspect in the
following chapter.

Immobilization of proteases: objectives, problems and


alternatives
The immobilization of enzymes is a general requisite for their
industrial implementation as biocatalysts, to simplify the reuse
of these relatively expensive biomacromolecules (Dicosimo and
others 2013; Cantone and others 2013; Sheldon and Van Pelt
2013; Liese and Hilterhaus 2013). Most of the considerations that
must be taken into account, when immobilizing an enzyme, are
similar for proteases or any other enzyme. We will deal with in
each separate case where the immobilization of proteases can make
a difference.
The necessity for enzyme immobilization to facilitate enzyme
reuse has promoted intense research trying to combine immobi-
lization with the solution of other enzyme limitations (Sheldon
and Van Pelt 2013). Thus, enzyme operational stability may be Figure 5–Enzyme immobilization via ion exchange. It requires multipoint
improved just by immobilizing the enzymes inside porous sup- immobilization, and ion exchange capacity of the support during
operation may fix altered conformations of the enzyme.
ports, because this will prevent enzyme aggregation, interaction
with external interfaces, and, very relevant in the case of proteases,
ultimately avoid autolysis (Garcia-Galan and others 2011). other enzymes (Mateo and others 2004). Enzyme activity may in-
Enzyme structural rigidity may be improved via immobilization, crease after immobilization by an actual positive change in enzyme
if many enzyme-support stable bonds are formed, if the spacer conformation that produces a more active enzyme conformation
arms are short enough and the support is rigid (Mateo and others (Secundo 2013), by improved stability if the activity is determined
2007; Garcia-Galan and others 2011). The enzyme groups im- under drastic conditions, or by other reasons which have been
plied in this multipoint covalent attachment should maintain their recently reviewed by Rodrigues and others (2013). The confor-
relative positions (the movement will just reduce to the length of mational changes (Secundo 2013) may also alter enzyme specificity
the spacer arm) under any inactivating condition. To maximize or selectivity. Immobilization has become a very useful technique
this structural rigidification, several aspects need to be considered. to tune enzyme catalytic properties, although this modulation is
It requires the use of a proper immobilization system, which in- nowadays performed just in an empirical way (Garcia-Galan and
volves diverse parameters not always considered. First, the use of others 2011; Rodrigues and others 2013).
a proper support is necessary (rigid, having large internal surfaces Immobilization may be performed simply by physical adsorp-
that permit a good enzyme-support geometric congruence and tion on the support (Jesionowski and others 2014). This may be
many active groups) (Garcia-Galan and others 2011; Dos Santos simple and efficient, and usually may permit the reuse of the
and others 2015a). However, this alone is not enough to maxi- support after enzyme inactivation (Jesionowski and others 2014).
mize the multipoint covalent attachment; a proper active group However, it has some problems (Figure 5) (Garcia-Galan and oth-
needs to be selected. This group should be very reactive with ers 2011). First, it is not as mild as many authors say: for example,
nucleophiles located in the enzyme surface and stable enough un- ion exchange requires the promotion of many enzyme-support
der immobilization conditions. For example, epoxide (Mateo and ion bridges that may produce enzyme inactivation, even though
others 2007), glutaraldehyde (Barbosa and others 2012, 2014), each individual bond is weak (Santos and others 2015a). Second,
glyoxyl (Mateo and others 2006), or vinylsulfone (Dos Santos and the support will never be fully inert, making the promotion of
others 2015b) have been reported to be very efficient for this new enzyme-support bonds during operation possible, perhaps
objective. Finally, the optimal results will be only reached with fixing incorrect structures of partially inactivated enzymes (Santos
an immobilization protocol that maximizes the enzyme/support and others 2015a). In fact, it has been recently shown how the
interactions: moderately high temperatures, alkaline pH values, enzymes immobilized on cation exchangers may form very strong
and one very important variable, time to permit the enzyme to support/unfolded enzyme composites when inactivated (Virgen-
support multi-interaction (Pedroche and others 2007). The final Ortı́z and others 2016, 2017). Finally, the low energy of each ion
surface of the support should preferably be as inert as possible to bond does not fix the relative positions of the involved groups.
prevent undesired enzyme/support interactions during biocatalyst That is, a strong rigidification may not be expected by these tech-
operation or storage (Santos and others 2015a). Immobilization niques (Garcia-Galan and others 2011). However, it may be very
may also permit the prevention of enzyme subunit dissociation useful to prevent enzyme subunit dissociation of multimeric en-
of multimeric enzymes if all enzyme subunits are involved in the zymes (Fernandez-Lafuente 2009). Entrapment of enzymes is a
immobilization. This should produce an increase in multimeric simple technique of enzyme immobilization (Reetz and others
enzyme stabilities (Lencki and others 1992; Poltorak and others 1996; Katiyar and Ali 2015; Bibi and others 2015; Biró and oth-
1998; Fernandez-Lafuente 2009). Moreover, immobilization may ers 2016). However, it may hardly improve enzyme properties
also improve some other enzyme properties. For instance, immo- (exception is made on multimeric enzymes, preventing enzyme
bilized enzymes may have a lower inhibition (Garcia-Galan and dissociation, or generation of favorable enzyme environments),
others 2011; Rodrigues and others 2013). One of the first ex- and it tends to be not very simple to be performed at a large scale.
amples of inhibition reduction after immobilization was shown However, it has been used in many instances to design biosensors
to use a protease from an extreme thermophile by Cowan and (Cosnier 1999; Gupta and Chaudhury 2007). Moreover, enzyme
Daniel (1982), and later it was shown by other researchers with leakage is a problem of this immobilization strategy, which has

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icant improvement on the enzyme properties (Garcia-Galan and


others 2011).
Regarding the supports, the cheapest one is the immobiliza-
tion without supports (Cao and others 2003; Sheldon 2007).
Crosslinked enzymes were the first proposal, but the reproducibil-
ity was not simple, and enzyme activity losses by chemical mod-
ification were significant (Cao and others 2003; Sheldon 2007;
Ghafourifar and others 2013). The crosslinked enzyme crys-
tals (CLECs) (Clair and Navia 1992; Khalaf and others 1996;
St. Häring and Schreier 1999; Yan and others 2015) yielded better
results, and later the strategy was simplified through the concept
of crosslinked enzyme aggregates (CLEAs). CLEAs formation is
an immobilization alternative with good acceptance in academia
(Cao and others 2003; Sheldon and others 2005; Sheldon 2007;
Sheldon, 2011) (Figure 6). The crystals are expensive and complex
to be produced, but enzyme aggregate production is easy. The en-
zymes immobilized following these protocols may be stabilized
(Sheldon and others 2005; Sheldon 2011) and it may be a good
solution to stabilize multimeric enzymes of the most complex
structures (Fernandez-Lafuente 2009) (Figure 6). In the case of
Figure 6–Stabilization of multimeric enzyme structures during the proteases, this may be a valid method of immobilization if they are
preparation of cross-linked enzyme aggregates (CLEAs). going to be used in some organic chemistry reaction (synthesis of
small peptides, resolution of racemic mixtures of esters or amides,
or similar). However, if they are going to be used in the hydrolysis
been usually solved by increasing the size of the enzyme molecule of proteins, it should be considered that only the external pro-
(attaching the enzyme to a polymer, or making an enzyme aggre- teases (if properly oriented) may be active, as by steric limitations
gate) (Wilson and others 2004; Matto and Husain, 2006; Cui and a substrate larger or similar in size to the protease may not access
others 2013; Nguyen and others 2016). Covalent immobilization the core of the CLEA particle, and even less of the CLEC particle
may produce a high rigidification if an intense multipoint cova- (Garcia-Galan and others 2011) (Figure 7). Together with steric
lent attachment is achieved, but after enzyme inactivation both hindrances and diffusional limitations, CLEAs have the problem
enzyme and support will be discarded and the immobilization of low mechanical resistance in aqueous media (Garcia-Galan and
protocols are then more sophisticated (Mateo and others 2007, others 2011).
Garcia-Galan and others 2011). Thus, covalent immobilization is Porous pre-existing supports are the most utilized materials to
only recommended if the immobilization really provides a signif- immobilize enzymes: their mechanical resistance may be selected

Figure 7–Usefulness of proteases cross-linked enzyme aggregate (CLEA) against different substrates. They can attack neither very large nor solid
substrates, being mainly useful for very small substrates (relative to the protein size).


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Figure 9–Advantages and drawbacks of using supports with very large


Figure 8–Utility of proteases immobilized on porous supports against pores. While this biocatalyst may be used against large substrates, its
different substrates. They may be useful for substrates as large as the loading capacity and mechanical resistance will be quite compromised.
protease, but may be inadequate for much larger substrates.

according to the reactor, loading may be very high (Garcia-Galan


and others 2011) (such as 100 mg/packed mL of wet support or
1 g of enzyme per g of solid support using agarose (Zucca and
others 2016)) and may produce operational stabilizations as stated
above (Mateo and others 2007).
However, using proteases, there are some applications where
the use of porous supports may be problematic. The most
obvious one is in the modification of solid substrates, like
textile materials; here the use of porous supports may be unsuit-
able to immobilize a protease (Garcia-Galan and others 2011)
(Figure 8). The hydrolysis of protein aggregates may be performed
using porous biocatalysts if they are re-solubilized, for exemple,
using high concentrations of caotropic agents like urea or guani-
dine (Garcia-Galan and others 2011). This makes the use of highly
stabilized proteases compulsory to maintain their function under
these drastic conditions (very stable proteases further stabilized by
multipoint covalent attachment) (Mateo and others 2007). Very
large protein-substrates are also a problem as that makes the use of
large pores in the support compulsory (Figure 9). This reduces the
specific area of the support (that way, volumetric loading capacity)
and the mechanical resistance of the support (Garcia-Galan and
others 2011; Rodrigues and others 2013). In any case, the protease Figure 10–Effect of orientation and loading on the activity compared with
large substrates of enzyme immobilized on supports having flat surfaces.
orientation regarding the support surface will play a critical role, Only properly oriented proteases will be active against large substrates,
as only properly oriented protease molecules may be accessed by and the requirements will increase when the loading of the support does.
the protein-substrate (Hernandez and Fernandez-Lafuente 2011)
(Figure 10). Steric hindrances increase with support loading. It
is possible that medium-loaded protease-immobilized biocatalysts by using a magnet (Hwang and Gu 2013; Cipolatti and others
have good activity agaist proteins (Figure 10C), while when 2014, 2016; Vaghari and others 2016; Kumari and Singh 2016;
this biocatalyst is fully loaded with protease the activity may Bosio and others 2016). They can permit to stabilize proteins
virtually disappear (Figure 10D) (Garcia-Galan and others 2011; via multipoint attachments. If properly oriented, they may even
Hernandez and Fernandez-Lafuente 2011; Rodrigues and others act on solid substrates (Figure 11) (Hwang and Gu 2013), but
2013). they are not devoid problems: the enzyme is not protected from
The use of nanoparticles may be an alternative to the use interactions with external interfaces or even from proteolysis (not
of porous materials. Magnetic nanoparticles may be handled, by an enzyme immobilized in the same particle, but by enzymes
even if they have a very small diameter (very small particles are immobilized on other particles) (Figure 12) (Garcia-Galan and
required to have good enzyme-loading, because diameter and others 2011; Cipolatti and others 2016; Betancor and others
specific area in non-porous supports are inversely correlated) 2005). The incidence of these problems may be reduced coating

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agaist any substrate, but they also have some limitations and prob-
lems. First, proteolysis of the modified protease is possible as well
as any other intermolecular- or interface-inactivating interaction
(Figure 13). Second, protease stabilization is limited, as the poly-
mer will not be very rigid. Finally, they can only be used if the final
product is fully soluble; otherwise precipitated protease/polymer
recovery will not be possible.
Therefore, although immobilization is a potent tool to improve
enzyme properties (Mateo and others 2007; Garcia-Galan and
others 2011), the final use of the catalyst, when using proteases,
may exclude some kind of supports and render others less suitable
to improve enzyme properties.
There are many examples of the use of immobilized proteases in
the literature. We will comment only on some of the most recent
ones. Recent studies have shown that trypsin covalently immo-
bilized onto modified magnetite nanoparticles exhibited a higher
Km (12.1 mM) than the free trypsin (5.1 mM), which suggested
conformational alterations on the enzyme structure after their co-
valent insolubilization (Atacana and others 2017). However, this
Figure 11–Advantages of using nanoparticles to immobilize proteases: immobilized trypsin biocatalyst could be reused for several cycles,
the immobilized enzymes may be used to hydrolyze even solid substrates. and it maintained around 59% of its initial activity when utilized
in casein hydrolysis. The effective hydrolysis of casein employ-
the protease with a polymer, but this needs to be optimized ing this immobilized enzyme biocatalyst was confirmed by liquid
to permit access of the substrate to the protease-active center chromatography–mass spectrometry, showing it was similar to the
(Betancor and others 2005; Cipolatti and others 2016) (Figure 12). results achieved when using free trypsin and demonstrating the
Another alternative to immobilize proteases in an active form prevention of autolysis (Atacana and others 2017).
(compared to complex substrates) is the use of smart polymers. Chymotrypsin was immobilized in glyoxyl agarose (Bahamon-
Then the protease may act almost like a free enzyme under des and others 2017), but finding diffusional problems on the
some circumstances and precipitate under other conditions (Sardar activity recovery. This was modulated by the textural properties
and others 2000; Roy and Gupta 2003;Cirillo and others 2014) of the support and the enzyme-loading: the diffusional problems
(Figure 13). These polymer-immobilized enzymes may be used increased with the particle size and enzyme-loading.

Figure 12–Drawbacks of the immobilization of proteases in nanoparticles: interactions with macromolecular structures are not prevented. Coating
with polymers may be a simple solution.


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Figure 13–Proteases modified with smart polymers: advantages and drawbacks.

Ficin was immobilized on glyoxyl-agarose, and 30% of the ac- though the positive effects of a proper immobilization are also
tivity was retained under mild conditions (Siar and others 2017). skipped). In this bioreactor, a semi-permeable membrane module
However, the biocatalyst stability greatly improved, which permit- is used in the reactor. The membrane must permit passage of pep-
ted the catalyst to retain double the activity at pH 10, threefolds tides of the desired size and amino acids from the reaction mixture,
more activity at 80 °C and it became 3 times more active in the while the enzyme, whole substrate proteins, and large peptides
presence of 2 M urea than the free enzyme. Moreover, the bio- remain into the reaction tank. Membrane bioreactors combine
catalyst could be re-used for 5 cycles at 55 °C in casein hydrolysis selective elimination of products from the reaction medium with
while maintaining the initial activity (Siar and others 2017). controlled biochemical reactions (Giorno and Drioli 2000). They
Trypsin was immobilized in a lignocellulosic support (corn cob present some advantages compared to other bioreactors. For ex-
powder—CCP) activated with glyoxyl groups, glutaraldehyde, and ample, the use and re-utilization of soluble enzymes is permitted.
IDA-glyoxyl (Bassan and others 2016). The retention of catalytic Inhibitory effects of the products may be prevented by continuous
activity in the optimal biocatalyst was next to 75%. These biocat- removal of the reaction products, and the maximum molecular size
alysts were very stable at 65 °C, and they were appropriate for the of the product-peptides may be selected by the molecular weight
synthesis of some bioactive peptides. cut-off of the membrane. Compared to the use of free enzyme in
In other papers, trypsin and chymotrypsin were immobilized in a standard bioreactor, the advantages are clear. For example, the
vinylsulfone agarose, showing an impressive number of enzyme- inactivation of the protease is not necessary to halt the process,
support bonds and a stabilization even higher than when using and enzyme re-use is possible, since the enzyme is confined to
glyoxyl agarose (Dos Santos and others 2014 b, c). Trypsin even the inside of the bioreactor. However, the use of free enzymes in
increased the final activity after immobilization (Dos Santos and membrane reactors presents the same problems as those with the
others 2015a c). use of actual free enzymes, namely lower stability or autolysis.

Bioreactors Proteases in non-conventional media for synthetic


Martin and others (2004) stated “Bioreactors are generally de- purposes
fined as devices in which biological and/or biochemical processes There is extensive literature on the application of hydrolase en-
develop under closely monitored and tightly controlled environ- zymes in organic synthesis carried out in non-aqueous media such
mental and operating conditions (pH, temperature, pressure, nu- as organic solvents, solvent-free reaction media or ionic liquids
trient supply, and waste removal). The high degree of reproducibil- (Carrea and Riva 2000; Milner and Maguire 2012;Wang and oth-
ity, control and automation introduced by bioreactors for specific ers 2016). Proteases have also been applied for synthetic purposes.
experimental bioprocesses has been key for their transfer to large- In fact, based on the principle of reversibility, proteases can catalyze
scale applications.” Different types of bioreactors have been found the hydrolysis of ester and amide bonds and the reverse reaction
to utilize proteases. (ester and peptide bond formation). In particular, proteases have
Enzyme membrane bioreactors make enzyme immobilization been applied in biocatalysis especially for peptide synthesis either
(to re-use the enzyme) unnecessary (Pietro and others 2008) (al- by a kinetically controlled or an equilibrium-controlled approach

426 Comprehensive Reviews in Food Science and Food Safety r Vol. 17, 2018 
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Proteases in food technology . . .

jor drawbacks of the equilibrium-controlled synthesis are usually


lower yield and a slower reaction rate with respect to the kinetically
controlled reactions. Consequently, higher amounts of biocatalyst
are necessary. Moreover, optimal reaction conditions are required
to shift the equilibrium toward peptide formation and the use
of an appropriate organic solvent as the reaction medium might
be beneficial for this purpose, provided that the amino acids are
soluble in it (Kasche 1986).
Thus, it appears clear that when proteases are used for synthetic
purposes, either in a kinetically controlled or in an equilibrium-
controlled process (Figure 14), the use of organic solvents as reac-
tion media is useful to reduce the hydrolysis of the protease-acyl
complex, owing to the lower quantity of water present in the
reaction.
The extreme of this situation is when proteases are used in
neat organic solvents. In this condition, the enzyme (in the form
of a lyophilized powder or immobilized onto a support) can be
Figure 14–Thermodynamically controlled synthesis of amide bonds using
proteases. Yields are determined by the thermodynamic constant of the
suspended (or, even dissolved) in the reaction medium with a
process and they are independent from the catalyst. low (less than 5% v/v) amount of aqueous buffer to improve
enzymatic activity (Secundo and Carrea 2003). Nevertheless, the
amount of water present in the reaction medium (better expressed
(Jakubke 1994; Deschrevel and others 2003; Yazawa and Numata as water activity, “aw”) may have a strong influence on the catalytic
2014). properties of the enzyme and on the reaction yield (Bell and
For kinetically controlled synthesis, serine and cysteine pro- others 1995). The use of enzymes in neat organic solvents is a
teases form reactive acyl enzyme intermediates with an activated conceptually different situation compared to the employment of
substrate (usually an ester, although it may also be an amide). In a the enzyme in water-organic solvent mixtures. In fact, in this
second step, the acyl group should be preferentially transferred to latter case, the organic solvent is added to favor the dissolution
the amino groups of amino acids or peptides (aminolysis). How- of insoluble reactants, but in equilibrium the hydrolytic reaction
ever, in the presence of water the hydrolysis of the acyl enzyme or may prevail on the synthetic one, depending on the difference in
the hydrolysis of the synthesized peptide (a water molecule attacks the pKs of the amino and carboxyl groups involved, the excess of
the acyl enzyme intermediate) also occurs. Then, the activated one of the substrates, and the concentration of solvent that may
acyl donor substrate decreases gradually during the course of the be used. In this regard. One very important feature of an organic
reaction, and the effect of hydrolysis increases (Kasche 1986). solvent for a proper medium for this kind of reactions is its capacity
Thus, in a kinetically controlled synthesis, the aminoly- to increase the pK of the carboxylic acid (Fernandez-Lafuente and
sis/hydrolysis ratio has to be increased for obtaining a high peptide others 1991; Rosell and others 1998).
yield (Figure 14). This can be obtained by the use of efficient nu- A similar situation is also observed in the case of enzymes in wa-
cleophiles and/or working in low water systems (Klein and others ter/solvent biphasic systems or in reverse-micelle systems where
2000), but it is necessary to stop the reaction before the rate of the enzyme is dissolved in water, even if the organic solvent is the
hydrolysis exceeds the rate of aminolysis and maximum yields may most abundant part (Carrea and Riva 2000; Zaks and Klibanov
start to decrease. Another possibility to reduce hydrolysis is by 1988). There are different advantages using enzymes in dry or-
favoring the precipitation of the products, as shown by Ungaro ganic solvents. In fact, it is possible to transform substrates that
and others (2015) for the synthesis of Z-Ala-Phe-OMe starting are unstable or poorly soluble in water avoiding water-dependent
from Z-Ala-OH and HCl•Phe-OMe. The reaction was catalyzed side-reactions, including the denaturation of enzymes that, in an-
by thermolysin at 50 °C in acetate buffer and calcium acetate to hydrous organic media, tend to have higher thermal stability. Fur-
enhance the thermal stability of the enzyme, and in the presence thermore, in an organic solvent it is possible to prevent microbial
of ammonium sulfate for promoting precipitation of the peptide contamination and to facilitate enzyme recovery that will be in ag-
product. Z-Ala-Phe-OMe is the precursor of L-Ala-L-Phe, an gregated form. Furthermore, it is possible to modulate the regio-
interesting dipeptide for food applications because of its bitter- and enantioselectivity of a given enzyme by changing the organic
ness. As the reaction maximum yield is determined by the kinetic solvent.
properties of the catalysts, the search of enzymes with better fea- Among the families of proteases, subtilisins are considered to
tures or the modification of the enzymes (via genetic, physical, or be the most efficient enzymes in organic media (Klein and others
chemical ways, including immobilization) may also improve the 2000). Subtilisins are bacterial serine proteases, classified today as
results obtained using these processes (Kasche 1986; Rodrigues subtilisin BPN’ or subtilisin Carlsberg, and they are commercial-
and others 2013). ized by several companies.
In equilibrium-controlled synthesis using proteases, the acyl An interesting example on the use of proteases for the syn-
donor is usually a free carboxyl group of an amino acid or of thesis of food-related compounds is the modification of sugars
a peptide (Kasche 1986). Proton transfer occurs during the first such as lactose, glucose, maltose, sucrose, or maltotriose (Riva
ionization step, followed by condensation, as shown in Figure 14. and others 1988; Carrea and others 1989). Sucrose esters consti-
The yields in this kind of reaction are determined only by the tute an interesting class of biosurfactants used in the preparation
thermodynamics of the process, and the change in the enzyme of microemulsions suitable as delivery systems of food-derived
can only increase the reaction rate or avoid enzyme inactivation or bioactive compounds (Flanagan and Singh 2006). Thanks to the
inhibition under the usually drastic utilized conditions. The ma- capabilities of Bacillus subtilis subtilisin, (crystalline enzyme, type


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VIII) and of protease N (a less purified form of subtilisin), it ganisms this could differ. It is possible to search those microor-
was possible to regioselectively acylate, to a level of gram scale, ganisms that survive under extreme conditions of pressure, ionic
sucrose in 1-O -position, obtaining 1 -O-mono-butyrylsucrose strength, temperature or pH (the so-called extremophiles) (Ratya-
(57% yield). The reaction was performed in anhydrous dimethyl- narayana and others 2005; Elleuche and others 2014; Banciu and
formamide with 2,2,2-trichloroethyl butyrate as acyl donor. Like- Muntyan 2015), expecting that their proteases may be adjusted to
wise, 6 -O-mono-butyryl cellobiose, 6 -O-mono-butyryllactose, these drastic conditions. This vision of microorganisms as a new
6 -O-mono-butyrylmaltose, 4 -O-mono-butyryllactose, and 3 - library of naturally differentiated enzymes (Tavano 2016; Mishra
O-mono-butyryllactose were also synthetized. Before their use and others 2016), together with other benefits of using microor-
as biocatalyst of these reactions, both enzyme preparations were ganisms on a large scale, shows the relevance of microbial proteases.
dissolved in 0.1 M aqueous phosphate, adjusted to pH 7.8, and Since some industrial procedures require the use of proteases under
lyophilized. In fact, it is known that the optimal ionization state conditions very distant from the known physiological ones (their
of the enzyme, before drying, markedly influences the catalytic applications in detergents with alkaline characteristics), or even in
activity of subtilisin in an organic solvent (Zaks and Klibanov the diverse media that constitute food matrices, including a vari-
1988). A more detailed study on the preferential position acylated ety of pH values, concentrations and nature of salts, and so on,
by subtilisin of sugars was conducted to investigate the esterifica- the growth of the collection of proteases available is a permanent
tion of several enantiomeric benzyl and naphthyl glycopyranosides goal (Sandhya and others 2005; Cobb and others 2012; Tavano
(Danieli and others 1999). 2016; Mishra and others 2016). Frequent market demands cause
Another interesting application of subtilisin in non-aqueous me- industries to search for improved enzymes, and the exploration for
dia, related to the food field, is the acylation of starch, which is new enzyme sources may be a good avenue.
possible thanks to the reaction of hydroxyl groups of the an-
hydroglucose unit monomer with substrates containing an acyl Microbial proteases
group. Acetylated starch derivatives with low degree of substitu- Microorganisms as a source of enzymes have many advantages
tion of acyl per mol of anhydroglucose are utilized as additives in such as their natural features and the possibility of rapidly cre-
the food industry to control and adjust the rheological behavior ating new features in microorganism and also their enzymes of
of pastes. Starch succinate strengthens starch swelling capability at great simplicity (Vermelho and others 2016; Mishra and others
lower temperatures, while alkenyl succinate starch derivatives give 2016). Both cases show the notable capability of microorganisms
to the starch emulsifying capabilities (Alissandratos and Halling to acclimate to altered environmental conditions, such as high
2012). Ferdinand and coworkers showed the possibility of acylat- temperature, drastic pH, concentrations of media constituents, or
ing a thin film of amylose (an organic solvent-insoluble polysac- presence of chelating agents (Sandhya and others 2005; Cobb and
charide consisting of α-1,4-linked glucose moieties), by catalysis others 2012; Souza and others 2015; Mishra and others 2016).
in organic solvents, using an organic-soluble enzyme preparation That is, there is interest in evaluating enzymes in microorganisms,
of subtilisin Carlsberg (from Bacillus licheniformis). The peculiarity hoping to find huge amounts and great metabolic diversity (Li and
of this process is that acylation of the insoluble polymer occurs others 2013).
only in the presence of a soluble enzyme form. Many interesting proteases have been found by screening ex-
The high stability and versatility of subtilisin was also proved tremophiles, which naturally synthetize enzymes that retain their
by suspending it in protic ionic liquids for the transesterifica- functions under extreme conditions, such as high pressure, high
tion reaction of N-acetyl-L-phenylalanine ethyl ester with 1- radiation expositure, high salinity, drastic pH, or extreme tempera-
propanol. Among the different ionic liquids tested, subtilisin was tures (van den Burg 2003; Eijsink and others 2005). Thermostable
only active in diethanolammonium chloride, while chymotrypsin enzymes have been isolated from thermophilic microorganisms
was not active in the same ionic liquids (Falcioni and others which live at 60–80 °C (hyperthermophiles grow at temperatures
2010). above 80 °C). They contain proteases with rigid enough structures
The above examples of applications of subtilisin indicate that to resist thermal denaturation or the presence of organic solvents
using proteases in non-aqueous media can be a useful methodol- (Fontana and others 1998; Mishra and others 2016). In this way,
ogy for the production of various compounds and even macro- the use of proteases in protocols performed at high temperatures is
molecules useful for the food industry. Nevertheless, for a more an actual benefit, enhancing the speed of the reaction not only by
diffuse use of this methodology, it is important to find other stable the effect of the enzyme kinetics, but also by permitting the joint
and versatile proteases able to catalyze the synthetic reactions in action on the substrate (proteins) that will be partially unfolded
non-aqueous media. This may allow enlarging the possibility to at high temperature. Folded proteins may resist better the hydrol-
develop biocatalytic methods, both in water and in non-aqueous ysis catalyzed by proteases, but once they are submitted to high
media, for the preparation of interesting industrial products. temperatures, proteins may become partially denatured, and this
increases the accessibility of the proteases to their target position.
Sources of Proteases For example, the protease-catalyzed hydrolysis of hard-to-degrade
Considering that proteases are closed related to the vital cycles animal proteins generated in the meat industry was improved by
of all living beings, the numerous tissues of animals and plants or using thermostable proteases at high temperature. The high tem-
whole microorganism cells (even the most primitive ones) may all perature produced the protein-substrate thermal unfolding and
be considered as protease sources (Davesena 2010). Moreover, the yielded higher proteolysis vulnerability of the proteins (Suzuki and
features of these proteases will mirror their living circumstances. others 2006). Moreover, high temperatures may decrease contam-
Thus, there are many changes among proteases from different ination of the product by microorganisms that could contaminate
species, and a long history of changes arises from a long natural the reaction medium or the substrate.
evolution. However, most proteases have features that show mild Cold-adapted microorganisms can grow under 0 °C, and
life conditions, mainly with regard to animal and plant sources even at −20 °C. This should be related to enzymes adapted to
(Castro and Martı́n-Hernández 1994). However, among microor- these specific thermal condition, and include the production of

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cold-adapted proteases (Siddiqui and Cavicchioli 2006). The main texture, treatment of flour in the manufacture of baked goods,
protease characteristic that justifies their adaption at these cold cheese flavor development, meat tenderizing, dehairing of skins,
temperatures relies on a very flexible structure, which equilibrates improving digestibility of animal feeds, and so on (Guntelberg and
the low energy existing at these very cold environments. This Otteson 1952, Smih and others 1968; Kumar and Takagi 1999;
suggests that these proteases exhibit a decreased activation en- Sumantha and others 2006).
thalpy and more negative activation entropy when compared with Thus, the diverse natural conditions under which microorgan-
standard proteases. This would provide economic profits, because isms may live and, therefore, their innate enzyme variants, can
utilizing lower processing temperatures produces energy savings. produce and contain a broad range of microbial proteases to be
Moreover, utilization of these cold-adapted proteases possesses studied and evaluated. This agrees with the industrial require-
other advantages, since the processes performed at low temper- ments, because the constant progress in industrial procedures often
atures can prevent chemical degradation of the food product (its needs an increasing variety of catalytic features of the proteases. In
vitamins). This chemical degradation will produce a decrease in the this context, the prospects of utilizing techniques like site-directed
nutritient content of the final product. High temperatures also fa- mutagenesis or directed-evolution, again present benefits to the
vor losses of volatile compounds, thereby altering the final flavor of utilization of microorganisms as sources of enzymes (Eijsink and
the product. Besides, since cold-adapted proteases generally con- others 2005; Li and others 2013). Creating proteases with en-
tain structure adapted to work at low temperatures, they can often hanced functions to reach the necessities of particular commercial
be inactivated by small increases in temperature changes, which uses may be achieved with these techniques (Li and others 2013).
facilitate the interruption of proteolysis by using only small incre- Enzymes from microorganisms can be improved by applying site-
ments of the temperature of process. (Cavicchioli and others 2011; directed mutagenesis techniques (including deletions, insertions,
Lylloff and others 2016). A cold-adapted protease produced by or/and recombination), thus permitting the achievement of a “ra-
a deep-sea cold-adapted bacterium, Pseudoaltermonas sp. SM9913, tionally designed” protease (Eijsink and others 2005; Li and others
was used to hydrolyze marine fish, pork, and shrimp meat samples 2013). Alternatively, directed evolution uses selective pressure to
treated at 0 °C. The treatment liberated more essential amino a collection of variants of a desired biological entity to identify
acids and free taste compounds when utilizing cold-adapted those variants having properties close to the desired ones. It is
protease than when treating with mesophilic proteases (He and based on the production of a large genetic variety followed by
others 2004). selection/screening. This "laboratory evolution” increases the rate
Halophilic microorganisms are an other kind of interesting ex- and mimics natural evolution; it has enormous potential to en-
tremophiles. They are capable to growth under hypersaline condi- hance enzyme features. However, this strategy is time-consuming
tions (DasSarma and DasSarma 2015). They have also been sources (Coob and others 2012). The fact is that approximately 90% of
of interesting proteases, providing specifc advantages for some food industrial enzymes are recombinant forms (Adrio and Demain
processes. Hypersaline conditions may permit performing food 2014).
proteolysis processes without obeying strictly sterile conditions, Microbial proteases are frequently synthetized as extracellular
thanks to the microorganisms growth inhibitory effects due to the proteins in nature; and this is another relevant advantage of using
low water activity of these media. The characteristics of these me- microorganisms as protease producers. These enzymes are directly
dia with low water activity conditions are similar to those found in secreted into the fermentation broth and ease downstream process-
mixtures of aqueous-organic solvents. This makes the halophilic ing, preventing some retrieval and purification steps of the enzyme
enzymes generally maintain high activity also in organic media during its manufacture, steps that cannot be prevented when us-
and may be potential biocatalysts suitable for applications in pro- ing proteases directly obtained from animals or plants (Savitha and
tein synthesis processes (as previously discussed here). (DasSarma others 2011; Souza and others 2015). One problem of extracellu-
and DasSarma 2015). lar enzymes is that the enzymes are diluted in the whole culture
Microbial proteases are relevant examples in the families of medium, and this may become a problem at the industrial scale of
acidic or alkaline proteases. Microbial rennin-like proteases are protease production.
good examples of acid proteases (Moschopoulos 2016). Neutral Fungi are often utilized in protease production, because they
proteases, mainly fungal neutral proteases, are relevant constituents have advantages that depend on the kind of medium utilized in
of commercial enzyme preparations, which have uses in protein their growth. Fungi can grow on cheap materials and secrete large
modification, food processing and baking, and also in pharma- quantities of enzymes into a culture medium which could facil-
ceutical, animal feed, and leather industries (Sumantha and oth- itate their downstream processing (Anitha and Palanivelu 2013,
ers 2006; Gupta and Ayyachamy 2012). Its frequent high affinity Souza and others 2015). Different ways of cultivation can be used
for hydrophobic amino acids gives an advantage as a de-bittering depending on the convenience and features of the microorganism
reagent. Aspergillus oryzae is the most important fungal source of utilized. Both solid state and submerged fermentation are fre-
neutral proteases (Sumantha and others 2006). Their main uses are quently utilized in the production of proteases by fungi (Devasena
for meat protein recovery, casein and whey protein hydrolysis, fish 2010). Some species of filamentous fungi, like Aspergillus, Penicil-
protein hydrolysis, gelating hydrolysis, soy sauce production, soy lium, and Paecylomices have shown to be good producers of ex-
protein hydrolysis, and meat tenderization (Sumantha and others tracellular protease in submerged fermentation. This production
2006). The thermostable protease thermolysin, produced by Bacil- strategy has advantages, due to the control of the process, and be-
lus stearothermophilus, which can act at 80 °C (Mattheus 1988), is cause it allows easy recovery of extracellular the enzymes. Other
attracting much research interest. advantages are low production costs, low wastewater output, low
Alkaline proteases are very relevant, because of their stability mechanical energy expenditures (due to being a static process),
and activity at alkaline pH values. Subtilisin Carlsberg produced by simplicity, and the low moisture content which can greatly de-
Bacillus licheniformis, subtilisin Novo, and subtilisin BPN, are some crease bacterial contamination during fermentation. The main
popular serine alkaline proteases. These enzymes can be used in drawbacks of this fermentation are the lack of control of temper-
flavor and color development in cookies, improvement of dough ature and pH (Sandhya and others 2005).


C 2018 Institute of Food Technologists® Vol. 17, 2018 r Comprehensive Reviews in Food Science and Food Safety 429
Proteases in food technology . . .

Some outstanding microbial proteases Conclusion


Alcalase is a commercial protease cocktail; it was initially ob- Proteases are and will very likely remain the most utilized en-
tained from Bacillus subtilis, a microorganism that is capable to zymes at both academic and applied levels. Recent advances in
produce diverse alkaline extracellular proteases. The first of these microbiology (metagenomics) and genetics (directed evolution)
proteases was determined by Linderstrom-Lang and Ottesen and may provide researchers with proteases whose properties are near
purified by Gtintelberg and Ottesen, and now it is named sub- the industrial requirements. Moreover, production of enzymes
tilisin Carlsberg (DeLange and Smith 1968), but it has also been is also experiencing an impressive development in recent times.
called subtilisin A, subtilopeptidase A, and then Alcalase. Initially Furthermore, progress in material science, nanotechnology, solids
if was used in the detergent industry, due its alkalophilic features, chemistry, and protein chemistries, to mention a few examples,
but many studies have also shown a great range of applications may permit achieving immobilized protease biocatalysts with sig-
in the modification of foods. Cabanillas and others (2012) de- nificantly improved properties that will overcomie the current
scribed that roasted peanut proteins decreased by 65 % IgE reac- drawbacks of the immobilization processes. New bioreactors may
tivity after 300 min of hydrolysis using Flavourzyme as a catalyst also increase the range of processes where enzymes may be utilized.
and a 100 % decrease in IgE reactivity using Alcalase after only Therefore, proteases may have a future full of successful new
30 min of hydrolysis. Sweet sorghum grain proteins and salmon applications, not only in food and cleaning technologies, but also
hydrolysates exhibited the highest ACE inhibitory activity when in the pharmaceutical and fine chemistry industries. Thus, pro-
hydrolyzed using Alcalase (Ahn and others 2012; Wu and others teases should be expected to maintain their prominent position in
2016). Enhancement of the antioxidant activity of the chickpea enzyme utilization in the medium and even the long term.
protein was also shown after Alcalase hydrolysis (Ghribi and others
2015). Acknowledgments
Flavourzyme is another commercial peptidase preparation (sup- The authors are grateful to Univ. Federal de Alfenas –
plied by Novozymes) containing different endo- and exopeptidases MG- Brazil. This work was partially supported by grants
from Aspergillus oryzae, such as: alkaline protease 1, neutral pro- from the Spanish Ministry of Economy and Competitive-
teases 1 and 2, dipeptidyl peptidases 4 and 5, leucine aminopep- ness (MINECO) projects number CTQ2013-41507-R and
tidases 2 and A, (Merz and others 2015a, 2015b). They have CTQ2017-86170-R. A.B.M. thanks MINECO, Generalitat Va-
many applications in academy and the industry because of the lenciana and FEDER (CTQ2015-66080-R MINECO/FEDER
synergy among endo- and exopeptidases, which has been deter- and PROMETEOII/2014/010) for financial support.
mined to be critical for an effective hydrolysis of proteins. But this
mixture of proteases presents some disadvantages, such as: some Conflict of Interest
changes of the blend composition from batch to batch reduce the The authors declare that they have no conflict of interest.
reproducibility of the hydrolysis process; lower control over the
exact modification on the substrate; each enzyme can be altered
by changes in the medium in a different way and even be af- References
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