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SHORT COMMUNICATION
KEY WORDS Rickettsia sp. strain Colombianensi, Amblyomma dissimile, Amblyomma sp. larvae,
Rhipicephalus microplus larvae, tick
Numerous diseases are caused by bacterial, viral, Recently, the availability of molecular tools to in-
and protozoan agents transmitted by ticks. There vestigate rickettsial infections in arthropods and clin-
are ⬇877 tick species worldwide, and vertebrate ical samples has allowed the description of new Rick-
blood is required for their survival, growth to the ettsia spp. (Raoult et al. 2005, Hechemy et al. 2006).
next developmental stage, and egg production. This The purpose of this study was to provide molecular
close relationship between ticks and their verte- evidence for the presence of a possible new species of
brate hosts has resulted in the emergence and main- rickettsia found in ticks collected in a township from
tenance of zoonotic infections that can cause severe the North of Colombia (Cordoba).
illness or death in people and domesticated animals
(Dṍaz 2010).
Materials and Methods
Rickettsia are gram-negative, nonmotile, nonspore
forming, highly pleomorphic ␣-1-proteobacteria. They From January to December 2009, a total of 55 Am-
are obligate intracellular parasites that multiply freely blyomma dissimile (Koch) ticks (42 adult and 13
in the cytosol of eukaryotic cells. They have a world- nymphs) were removed from 19 iguanas (Iguana
wide distribution and are mainly maintained in nature iguana) in the Municipality of Monteria (8⬚ 45⬘01⬙ N.
by transovarial transmission in arthropod populations, 75⬚ 53⬘25⬙ W in the North West of Colombia). All
with arthropods sometimes acting as vectors of rick- captured iguanas were infested by ticks, and between
ettsia to vertebrate hosts (Parola et al. 2005). 1 and 5 ticks were collected per animal (average of 2.8
ticks per host). Blood samples from iguanas were not
1 Instituto de Investigaciones Biológicas del Trópico, Facultad de obtained. Furthermore, 3,114 ticks [458 Amblyomma
Medicina Veterinaria y Zootecnia, Universidad de Córdoba, Córdoba, sp. larvae, 2,636 Rhipicephalus microplus (Canestrini)
Colombia.
2 Infectious Diseases Area, Hospital San Pedro-CIBIR, C/ Piqueras larvae and 20 Amblyomma sp. nymphs] were collected
98, 26006 - Logroño, La Rioja, Spain. in the Municipality of Los Cordobas (8⬚ 53⬘59⬙ N. 76⬚
3 Corresponding author, e-mail: jaoteo@riojasalud.es. 21⬘59⬙ W North West of Colombia) by drag sampling.
The area of Los Cordobas, mostly used for agriculture Table 1. GenBank accession numbers for nucleotide se-
and livestock, is a tropical dry forest with temperature quences from validly published Rickettsia species used to generate
the phylogenetic tree of Rickettsia sp. strain Colombianensi
⬎24⬚C and from 20 to 100 m above sea level.
Ticks (including larvae) were individually identi- GenBank accession
Þed by taxonomic keys (Barros-Battesti et al. 2006, Rickettsia spp. no. for PCR target genes
Cooley 1946) with the collaboration of an expert gltA ompA ompB
(Prof. Marcelo B. Labruna, Universidad de Sao Paulo,
R. sibirica sibirica U59734 U43807 AF123722
Brazil). Specimens were grouped into 113 pools: 30 R. sibirica mongolitimonae U59731 U43796 AF123715
pools containing 1Ð 4 A. dissimile individuals (adults or R. parkeri U59732 U43802 AF123717
nymphs) from the same host, and 83 pools containing R. africae U59733 U43790 AF123706
up to 30 Amblyomma sp. larvae, up to 50 Rh. microplus R. conorii caspia U59728 U43791 AF123708
R. conorii israelensis U59727 U43797 AF123712
larvae and Þve Amblyomma sp. nymphs. DNA from R. conorii indica U59730 U43794 AF123726
pools was extracted by using a QIAamp DNA Mini-Kit R. conorii conorii U59730 U43806 AF123721
(QIAGEN, Valencia, CA) and eluted in a Þnal volume R. slovaca U59725 U43808 AF123723
of 100 l. To ensure there was no contamination, a R. honei U59726 U43809 AF123724
R. rickettsii U59729 U43804 X16353
blank tube was included for DNA extraction every 15 R. japonica U59724 U43795 AF123713
pools. PuriÞed DNA was stored at ⫺20⬚C until used as R. heilonjgiangensis AF178034 AF179362 AY260451
template for polymerase chain reaction (PCR). For R. montanensis U74756 U43801 AF123716
initial screening of rickettsial DNA, 5 l of each pooled R. raoultii DQ365804 DQ365801 DQ365798
R. aechlimannii U59722 U43800 AF123705
tick DNA template were used for real-time PCR (RT- R. massilliae U59719 U43799 AF123714
PCR). RT-PCR was performed using a LightCycler R. rhipicephali U59721 U43803 AF123719
rapid thermal cycler system (Roche Diagnostics, R. tamurae AF394896 DQ103259 DQ113910
Somerville, NJ). Primers CS-5 (forward) and CS-6 R. australis U59718 AF149108 AF123709
R. monacensis DQ100163 DQ100169 EF380356
(reverse), targeting a 147-bp fragment of the citrate R. felis AF210692 AF210694 AF210695
synthase (gltA) gene of Rickettsia spp., and a hydro-
lysis probe 6-FAMÐCATTGTGCCATCCAGCCT-
ACGGT-BHQ-1 (TIB MOLBIOL, LLC, Adelphia, NJ) (model ABI-PRISM 3130XL, Applied Biosystems, Fos-
were used (Labruna et al. 2004a). This assay included ter City, CA). Generated sequences were submitted to
an internal control for each reaction which ampliÞes Basic Local Alignment Sequence Tool (BLAST) anal-
a portion of genome of Phage Lambda (265 pb). Prim- ysis (http://blast.ncbi.nlm.nih.gov/Blast.cgi). Phylo-
ers Lambda F (forward)ÐATGCCACGTAAGC- genetic analysis was conducted with MEGA4 (Tamura
GAAACA-, Lambda R (reverse) GCATAAAC- et al. 2007). GenBank accession numbers for nucleo-
GAAGCAGTCGAGT and hydrolysis probe Lambda tide sequences from validly published Rickettsia spe-
TM DYXL-CGTCGCTTTTTGCTGTCCCAC-BBQ cies used to generate the phylogenetic tree are shown
(TIB MOLBIOL, LLC). The hydrolysis probe assays in Table 1.
contained a FastStart TaqDNA Polymerase (Roche) 4
l, 1 l of each primer at 10 M, 0,2 l of each probe
Results
at 20 M, 2 l of Phage Lambda DNA and 4,6 l of
molecular-grade water. Real-time PCR cycling con- Rickettsial DNA was detected in 28 out of 113
ditions were as follows: 1 cycle at 95⬚C for 10 min, (24.8%) pools of ticks by RT-PCR for gltA gene.
followed by 40 cycles of 10 s at 95⬚C, 15 s at 55⬚C, and These 28 positive pools were subsequently sub-
15 s at 70⬚C. For each reaction, both positive (Rick- jected to conventional PCR protocols targeting gltA,
ettsia amblyommii DNA) and negative (water) con- ompA, and ompB. Sixteen A. dissimile pools corre-
trols were included. Positive samples were further sponding to 14 iguanas as well as 12 free-living larvae
studied using gltA (401 bp), ompA (631 bp), and ompB pools (six Amblyomma sp. larvae pools and six Rh.
(811 bp) PCR assays and sequencing (Labruna et al. microplus larvae pools) were positive using this
2004a, Roux et al. 1996, Roux and Raoult 2000). To three conventional PCR assays. As expected, all
minimize the risk of contamination, the work was negative controls gave negative results. The preva-
carried out by experienced people. In addition, PCR- lence of Rickettsia in ticks expressed as percentage
mix and DNA were added in different areas of the and minimum infection rate (MIR) or the minimum
laboratory. Reactions were performed in automated percentage of ticks in a pool with detectable Rick-
MJ Research PTC-100TM thermal cyclers. For con- ettsia is shown in Table 2. This is based on the
ventional PCR, a recombinant TaqDNA Polymerase assumption that a PCR-positive pool contains at
(Invitrogen, Brazil) was used. PCR products were least one positive tick (Labruna et al. 2004b). Sub-
separated by electrophoresis on a 1.5% agarose gel, sequently, gltA, ompA, and ompB amplicons from
stained with ethidium bromide and examined using an two pools of A. dissimile adult ticks removed from
ultraviolet (UV) transilluminator (ImageQuant 100, iguanas in Monteria, and from two pools of free-
Uppsala, Sweden). The PCR products were cleaned living larvae collected in Los Cordobas (one pool of
using a PureLink Quick Gel Extraction kit (Invitrogen, Amblyomma sp. larvae and one pool of Rh. microplus
Carlsbad, CA) according to the manufacturerÕs in- larvae) were sequenced. These four pools were ran-
structions, and both strands of each fragment gene domly chosen from the 28 positive pools. Generated
were directly sequenced in an automatic sequencer sequences were edited and assembled, and primer
962 JOURNAL OF MEDICAL ENTOMOLOGY Vol. 49, no. 4
Table 2. Prevalence of Rickettsia in ticks expressed as the min. percentage of ticks in a pool with detectable Rickettsia and MIR
a
MIR, minimum infection rate.
b
A, adult ticks; N, nymphs.
sequences were removed from the edges. For each Amblyomma dubitatum recently found in Brazil
fragment gene analyzed, identical nucleotide se- (JN676158 and JN676159). ompB sequences for this un-
quences were obtained for all four pools. As for the classiÞed rickettsial strain (designated as Rickettsia sp.
closest valid Rickettsia species, gltA and ompA nu- strain Pampulha) are not available. The nucleotide se-
cleotide sequences generated from this study quences of gltA, ompA, and ompB genes generated from
showed 99.4 and 95.6% identity with Rickettsia ta-
this study have been deposited in the GenBank database
murae (AF394896 and DQ103259, respectively).
ompB nucleotide sequences showed maximum iden- under the accession numbers JF905456, JF905458, and
tity (97.6%) with Rickettsia monacensis (EF380356), JF905457, respectively. This new proposed spotted fever
and were 96.4% identical to R. tamurae (DQ113910). group Rickettsia detected in Colombia belongs to the
Our gltA and ompA sequences showed similar or same lineage of R. tamurae and R. monacensis, under
even higher percentages of identity (99.4 and 97.5%, 100% bootstrap support (Fig. 1). We proposed the name
respectively) with those of a Rickettsia endosymbiont of Rickettsia sp. strain Colombianensi.
Fig. 1. The phylogenetic position of Rickettsia sp. strain Colombianensi is shown. The evolutionary history was inferred
using the Neighbor-Joining method. The optimal tree with the sum of branch length ⫽ 0.54610104 is shown. The percentage
of replicate trees in which the associated taxa clustered together in the bootstrap test (1,000 replicates) are shown next to
the branches; only bootstrap values ⱖ80 are shown. The tree is drawn to scale, with branch lengths in the same units as those
of the evolutionary distances used to infer the phylogenetic tree. The evolutionary distances were computed using the Kimura
2-parameter method and are in the units of the number of base substitutions per site. All positions containing gaps and missing
data were eliminated from the dataset. Three genes were concatenated (gltA-ompA-ompB), and a total of 1,672 positions were
analyzed. Phylogenetic analyses were conducted in MEGA4 (Tamura et al. 2007).
July 2012 MIRANDA ET AL.: Rickettsia SP. STRAIN COLOMBIANENSI IN TICKS 963
nov., a spotted fever group Rickettsia, from ticks (Ixodes Venzal, J. M., A. Portillo, A. Estrada-Peña, O. Castro, P. A.
ricinus) collected in a European city park. Appl. Environ. Cabrera, and J. A. Oteo. 2004. Rickettsia parkeri in Am-
Microbiol. 68: 4559 Ð 4566. blyomma triste from Uruguay. Emerg. Infect. Dis. 10:
Tamura, K., J. Dudley, M. Nei, and S. Kumar. 2007. MEGA4: 1493Ð1495.
Molecular Evolutionary Genetics Analysis (MEGA) soft-
ware version 4.0. Mol. Biol. Evol. 24: 1596 Ð1599. Received 2 September 2011; accepted 11 May 2012.