Escolar Documentos
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Cultura Documentos
Biological molecules
Describe how hydrogen bonding occurs between water molecules, and relate this and other properties of water to the roles of water
in living organisms.
Structure of Glycine
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Emily Summers
Describe, with the aid of diagrams, the formation and breakage of peptide bonds in the synthesis and hydrolysis of dipeptides and
polypeptides.
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Emily Summers
Explain, with the aid of diagrams, the term secondary structure with reference to hydrogen bonding.
Explain, with the aid of diagrams, the term tertiary structure, with reference to hydrophobic and hydrophilic interactions, disulphide
bonds and ionic interactions
Ionic Interactions weak attractions between oppositely charged parts the molecule
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Emily Summers
Disulfide Bonds Two molecules of an amino acid close together, the sulphur atoms in
them bond together forming this bond. (E.g. Cysteine)
Hydrophilic Water attracting groups are likely to be pushed outside, affecting the
protein’s final structure.
Explain, with the aid of diagrams, the term quaternary structure, with reference to the structure of haemoglobin.
Haemoglobin Collagen
Globular protein Fibrous Protein
Large variety of amino acids in it’s primary 35% of primary structure is glycine
structure
Has a prosthetic group- haem Doesn’t contain a prosthetic group
Mostly wound into alpha helix structures Mostly left handed helix structures
Describe, with the aid of diagrams, the molecular structure of alpha-glucose as an example of a monosaccharide carbohydrate.
Describe, with the aid of diagrams, the formation and breakage of glycosidic bonds in the synthesis and hydrolysis of a disaccharide
(maltose) and a polysaccharide (amylose).
Compare and contrast the structure and functions of starch (amylose) and cellulose.
Starch Cellulose
Large molecules of many alpha glucose Large molecules of many beta glucose
molecules joined with condensation molecules joined with condensation
reactions, insoluble in water and form reactions, they are insoluble in water and
granules also strong
For energy storage in plants Structural found in plants where it forms
cell walls
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Emily Summers
Explain how the structures of glucose, starch (amylose), and glycogen and cellulose molecules relate to their functions in living
organisms.
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Emily Summers
Compare, with the aid of diagrams, the structure of a triglyceride and a phospholipid.
Phospholipid
Explain how the structures of triglyceride, phospholipid and cholesterol molecules relate to their functions in living organisms.
Triglyceride molecules are used as energy storage molecules. This is good because the
hydrocarbon tails of the fatty acids have lots of chemical energy that is released when
broken down, so lipids contain double the energy carbohydrates do.
They are insoluble because of their hydrophobic so they do not interfere with the water
potential in cells that would cause water to enter cells by osmosis so they could
swell/burst.
Phospholipid molecules have a hydrophilic head and a hydrophobic tail. The head faces
outwards and the tail faces inwards in the phospholipid bilayer on cell surface
membranes, making it difficult for water soluble substances like Na+ ions and glucose to
pass through.
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Emily Summers
Cholesterol is a lipid found in cell membranes for mechanical stability, and is used to
make steroids. It has a hydrocarbon ring structure attached to a hydrocarbon tail. The
hydrocarbon ring has a polar hydroxyl group attached to it which makes it soluble.
Describe how to carry out chemical tests to identify the presence of the following molecules: protein (biuret test), reducing and non-
reducing sugars (Benedict’s test), starch (iodine solution), and lipids (emulsion test).
Biuret’s Test
Add Benedict’s solution to the substance and heat to 80 degrees Celsius in a water
bath. If the solution changes colour from blue to green-brick red then it is a reducing
sugar. (Monosaccharide and disaccharide)
Non reducing sugars do not react with Benedict’s solution so there would be no colour
change E.g. Sucrose, formed by a condensation reaction between glucose and
fructose. The formation of this bond is different to reducing sugars, so it must be boiled
with hydrochloric acid, to hydrolyse/split the sucrose molecules to give glucose and
fructose monosaccharides. Then add an alkali to a cool solution to neutralise it, e.g.
NaCO3 solution. Then do the reducing sugar test and you should get a positive result.
Starch
Add iodine in a potassium iodide solution to the sample, and if there is starch the
sample solution will change from yellow/brown to a dark blue/black. Negative results
present no colour change.
Lipids
Mix the sample with ethanol, dissolving lipids present. Pour the solution into water in a
separate test tube. If there is a lipid there will be a cloudy white milky emulsion near the
top of the water.
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Emily Summers
Protein
Add biuret reagent to a sample. The reagent contains sodium hydroxide and copper
sulphate, reacting with the peptide bonds in protein turning the solution to a purple
colour if there is protein, and staying blue if there is no protein.
Describe how the concentration of glucose in a solution may be determined using colorimetry.
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Emily Summers
Nucleic Acids
State that deoxyribonucleic acid (DNA) is a polynucleotide, usually double-stranded, made up of nucleotides containing the bases
adenine (A), thymine (T), cytosine (C) and guanine (G).
A nucleotide
A phosphate group
Adenine and Thymine bond together with 2
hydrogen bonds, Cytosine and guanine join with
3 hydrogen bonds
Deoxyribose
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Emily Summers
Describe, with the aid of diagrams, how hydrogen bonding between complementary base pairs (A-T, G-C) on two anti-parallel DNA
polynucleotides leads to the formation of a DNA molecule, and how the twisting of DNA produces its double-helix shape.
Outline, with the aid of diagrams, how DNA replicates semi-conservatively, with reference to the role of DNA polymerase.
The enzyme called DNA helicase breaks the hydrogen bonds between the two
polynucleotide DNA strands unzipping the helix to form two single strands,
exposing the bases.
Each original strand is a template for a new strand, free floating DNA nucleotides
join to exposed bases on each original template strand by complementary base
paring (purine pyrimidine, A- -T, G- - -C)
The nucleotides on the new strand are joined by DNA polymerase, and new
hydrogen bonds are formed between the bases on the old and new strand.
Each DNA molecule contains one strand from the original DNA molecule and one
new strand.
State that a gene is a sequence of DNA nucleotides that codes for a polypeptide.
Gene A gene is a length of DNA that carries the code for the synthesis of one or
more specific polypeptides.
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Emily Summers
Outline the roles of DNA and RNA in living organisms (the concept of protein synthesis must be considered in outline only).
The sequence of bases on DNA are code instructions for proteins, they code for the
amino acid sequence present in the protein. This is a gene.
Transfer RNA Carries amino acids to the ribosomes and they are bonded together to
form polypeptides.
Enzymes
State that enzymes are globular proteins, with a specific tertiary structure, which catalyse metabolic reactions in living organisms.
Enzymes are:
Biological catalysts
Specific- because they catalyse a reaction with only one type of substrate
Enzymes are large molecules with hundreds of amino acids. A lot of these amino acids
work to keep the specific tertiary structure of the enzyme. The function of the enzyme
depends on the shape, and for the enzyme to work correctly the tertiary structure must
be maintained specifically.
All of the structures (primary, secondary, tertiary) of the enzyme is involved in the
specific active site shape. (Where the catalytic activity of the enzyme happens)
Enzymes are faster than catalysts and because they are specific to one reaction they do
not produce unwanted by products.
An individual cell could contain over one thousand enzymes to catalyse every process,
like digestion, respiration, photosynthesis.
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Emily Summers
Enzymes reduce the amount of activation energy needed, so reactions happen quickly
at lower temperatures, because of the way the active site is shaped to fit the substrate.
Enzyme’s active site is complementary to the shape of the substrate, they are specific.
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Emily Summers
Describe and explain the effects of pH, temperature, enzyme concentration and substrate concentration on enzyme activity.
pH
pH is the measure of the H+ ion concentration. These ions are positive so they are
attracted to negatively charged ions, or parts of molecules and repelled by positive
parts. Hydrogen bonds and ionic bonds hold the tertiary structure of an enzyme in place
so the active site is maintained in it’s correct shape. The bonds are there because of
electrostatic attraction between opposite charges on the amino acids making up the
enzyme.
Hydrogen ions interfere with these bonds and can alter the tertiary structure of an
enzyme by altering their concentration.
Enzymes have their own optimum pH, the H+ ion concentration gives the enzyme the
best overall shape. Enzymes work in a narrow pH range usually, and their pH range
often changes with their location. E.g. Pepsin is in the stomach and has an optimum pH
of 2. Handy! Whereas Trypsin has an optimum pH of 7 which is good for the conditions
of the small intestine it works in, where it digests protein.
Temperature
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Emily Summers
In large molecules like enzymes the vibration of molecules can break weaker bonds like
hydrogen or ionic bonds.
The weaker bonds are there in abundance in an enzyme molecule and hold the tertiary
structure in place, so they maintain the active site’s correct, specific shape.
And the tertiary structure is held less in the shape of the active site needed for it to work.
So rate of reaction will decrease if the substrate can’t fit in the active site.
If enough of the bonds are broken, the entire tertiary structure unravels and the
enzyme stops working.
If the tertiary structure of an enzyme is changed enough it will not function and it is not
restorable denaturation.
Concentration
Increasing the enzyme concentration increases rate of reaction to a point, until it will not
increase anymore because substrate concentration is the limiting factor. Reactions
cannot be quick if there isn’t enough substrate left, and vice versa.
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Emily Summers
Describe how the effects of pH, temperature, enzyme concentration and substrate concentration on enzyme activity can be
investigated experimentally.
Explain the effects of competitive and non-competitive inhibitors on the rate of enzyme-controlled reactions, with reference to both
reversible and non-reversible inhibitors.
Competitive inhibitors have a similar shape to the substrate so they occupy the active
site and form an enzyme inhibitor complex but no product is made. So the enzyme
cannot catalyse a reaction and rate of reaction slows down. Depends on inhibitor and
substrate concentration, e.g. if you increase substrate rate of reaction may increase.
Non Competitive inhibitors don’t occupy the active site, but attach somewhere else on
the enzyme to distort the tertiary structure of the enzyme. So the active site changes
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Emily Summers
and the substrate can’t fit anymore, so no reaction can be catalysed and reaction rate
decreases. Increasing substrate concentration has no effect.
Reversible inhibitors are when the inhibitor isn’t there permanently and afterwards the
enzyme is unaffected.
Non Reversible inhibitors are usually non competitive and the enzyme is denatured.
Explain the importance of cofactors and coenzymes in enzyme-controlled reactions
Coenzymes take part in the reaction and are changed, but are recycled back to take
place in the next reaction.
Viral infections are treated using chemicals that act as protease inhibitors, which stop
viruses from replicating by inhibiting the activity of protease- which are vital to viruses to
build their new virus coats. Usually these inhibitors are competitive.
Cystic Fibrosis sufferers have the problem that the passage of digestive enzymes that
are usually secreted from the pancreas into the gut is blocked, leading to digestive
problems. Enzymes in a tablet can overcome the problem; they are in an acid
resistant coat so they’re not destructed by acid/protein digesting enzymes located in
the stomach.
Health is a complete state of physical, mental and social well being as well as the
absence of disease or infirmity.
Disease is a departure from full health caused by a malfunction of the mind or body
Define and discuss the meanings of the terms parasite and pathogen.
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Emily Summers
Parasite Is an organism that lives in or on another living thing causing harm to the
host. External head lice Internal Tapeworm
Malaria is caused by a eukaryotic organism, from the genus Plasmodium and most
commonly the species Plasmodium falciparum.
Malaria is spread by means of a vector. The female Anopheles mosquito carries the
plasmodium from an uninfected to an infected person, they feed on blood with adapted
mouthparts to penetrate a blood vessel and withdraw blood, malarial parasites live in
the erythrocytes of humans and feed on Hb.
HIV/AIDS
The virus enters the body and is un-active, but once the virus is active and
attacks/destroys T helper cells in the immune system your ability to resist infection is
greatly decreased. You are open to opportunistic infections which will eventually kill the
person with HIV/AIDS.
Exchange of bodily fluids, e.g. blood to blood, sharing needles, unprotected sex
Unscreened blood transfusions
Mother to baby- across the placenta or during breast feeding
TB
It is usually in the lungs and although it is common it usually remains unactive or the
immune system controls it, it is transmitted by a droplet infection.
Overcrowding
Poor ventilation
Poor health, especially with HIV/AIDS
Poor diet
Homelessness
Contact with those who migrate from countries where TB is common
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Emily Summers
Malaria kills three million a year, but is limited to where the Anopheles can survive
which is tropical regions like Sub Saharan Africa. Global warming is a worry.
HIV/AIDS Pandemic. 45 million living with HIV/AIDS in 2005 and over half lived in sub
Saharan Africa.
TB Worldwide disease, new strains of Mycobacterium are resistant to drugs available
to treat it. Common in sub Saharan Africa but rising in Eastern Europe.
Define the terms immune response, antigen and antibody.
They try to prevent pathogens from entering the body, general mechanisms.
The skin
Main primary defence
Outer layer= epidermis
Keratinocytes are made by mitosis at the base of the epidermis, during migration
they dry out and the cytoplasm is replaced by keratin- called keratinisation. When
these cells reach the surface they aren’t alive anymore and the dead cells come
off, but this layer of dead cells are a good barrier to pathogens.
Mucous Membranes
In airways, lungs and digestive system
Goblet cells secrete mucus and mucus lines airway passages to trap pathogens.
Cilliated epithelium beats rhythmically to waft mucus to the back of the mouth
where it is swallowed down to the digestive system, the acidic stomach kills most
pathogens by denaturing their enzymes
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Emily Summers
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Emily Summers
Outline the mode of action of antibodies, with reference to the neutralisation and agglutination of pathogens.
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Emily Summers
A large antibody can bind lots of pathogens together so the group of pathogens are too
large to enter a host cell.
Compare and contrast the primary and secondary immune responses
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Emily Summers
Biodiversity
Define the terms species, habitat and biodiversity
D = (n/N)2.
There are three species of flower in a field, red, white and blue.
There are eleven organisms all together, so N = 11
There are three of the red species, five of the white and three of the blue
The closer to one the index is, the more diverse the habitat is. A high value indicates
high biodiversity in a habit which is beneficial, a low one indicates low biodiversity in a
habitat which isn’t so good, and may suggest that conservation methods might have to
be put in place.
Classification
Define the terms classification, phylogeny and taxonomy.
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Emily Summers
Outline the characteristic features of the following five kingdoms: Prokaryotae (Monera), Protoctista, Fungi, Plantae,
Animalia.
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Emily Summers
Outline the binomial system of nomenclature and the use of scientific (Latin) names for species.
One international name in latin with two parts is given to every organism. The
first part is the genus and is a capital letter, and the second is the species and is
lower case- typed in italics or underlined when written. E.g. Homo sapien
Helps to avoid confusion within scientists as they’re standard scientific names.
Use a dichotomous key to identify a group of at least six plants, animals or microorganisms.
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Emily Summers
Discuss the fact that classification systems were based originally on observable features but that more recent
approaches draw on a wider range of evidence to clarify relationships between organisms, including molecular evidence.
Compare and contrast the five kingdom and three domain classification systems.
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Emily Summers
Evolution
Define the term variation.
Discuss the fact that variation occurs within as well as between species.
Describe the differences between continuous and discontinuous variation, using examples of a range of characteristics
found in plants, animals and microorganisms.
Continuous Discontinuous
Height Dangling/attached ear lobes
Handspan Gender
Weight Blood groups
Shoe Size Bacteria with absence/presence of flagella
Continuous Discontinuous
Affected by environment & genes Unaffected by environment, just genes
Quantitative overlaps Qualitative no overlaps
Controlled by a large number of genes Controlled by few/one gene (monogenic)
(polygenic)
No distinct categories Distinct categories
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Emily Summers
Like heart rate, muscle efficiency, IQ, growth This type of variation is rare in animals
rate, rate of photosynthesis but abundant in plants, like seed colour,
petal colour, etc.
Genetic Environmental
Genes from our parents Linked with genetic
Combination of alleles Like height is somewhat
Not the same in any other living determined by your genes but
thing apart from identical twins the environment plays a part on
Never a complete match the height you will reach. (diet)
Human cells have 25,000 Environmental changes affect
different genes and a lot of them what genes in animals and plants
have more than one allele, so it are activated, bringing about
isn’t likely that any two changes we see
individuals will have the exact Obesity diet socio-economic
same allele combinations. issues. Westernized society has
more overweight people than
ledc’s
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Emily Summers
Outline the behavioural, physiological and anatomical (structural) adaptations of organisms to their environment
Explain the consequences of the four observations made by Darwin in proposing his theory of natural selection.
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Emily Summers
Discuss the evidence supporting the theory of evolution, with reference to fossil, DNA and molecular evidence.
Outline how variation, adaptation and selection are major components of evolution.
Discuss why the evolution of pesticide resistance in insects and drug resistance in microorganisms has implications for humans.
Conserving biodiversity
Outline the reasons for the conservation of animal and plant species, with reference to economic, ecological, ethical and
aesthetic reasons.
Discuss the consequences of global climate change on the biodiversity of plants and animals, with reference to changing
patterns of agriculture and spread of disease.
Explain the benefits for agriculture of maintaining the biodiversity of animal and plant species.
Describe the conservation of endangered plant and animal species, both in situ and ex situ, with reference to the
advantages and disadvantages of these two approaches.
Discuss the role of botanic gardens in the ex situ conservation of rare plant species or plant species extinct in the wild,
with reference to seed banks.
Discuss the importance of international cooperation in species conservation with reference to the Convention in
International Trade in Endangered Species (CITES) and the Rio Convention on Biodiversity.
Discuss the significance of environmental impact assessments (including biodiversity estimates) for local authority planning
decisions
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