Latex Paper

A Using L TEX to prepare manuscript for submission
Fairuz Abdullah
fairuz@ieee.org tuguniten@gmail.com
College of Engineering
February 14, 2012
Fairuz Abd (TuGUNITEN)
February 14, 2012
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Agenda
1 2
Why? Basics Package installation Typesetting Text Structuring and Cross-referencing Text Typesetting Mathematics Graphics, Figures and Tables Citations and References Journal formating
3 4 5 6 7 8
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Why?
Agenda
1 2
3 4 5 6 7 8
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Why?
Concerns when writing a paper/thesis. . .

Is my lit survey strong enough to support my hypothesis? My bibliography/citation formatting got inconsistent. My citation and bibliography arent synchronised! My math equations dont display/print correctly. Should this discussion go under this section or that? What formatting did I use for my subsection headings again? Didnt I set that heading to bold and italic 5 minutes ago? My section/gure/page numberings gone all wrong! Does this subsection go together with this section? Oops, I forgot to update the TOC. What results should I put in this table? How do I t/split this huge table on/across page(s)? My gure jumped off the page again! The application crashed! MY FILE WAS CORRUPTED!!!
Fairuz Abd (TuGUNITEN) February 14, 2012 4 / 63
Why?
A What is L TEX?
Donald Knuth created TEX = TeX (from Greek art; craft)

pronounced tech, like Scottish loch a computer typesetting system for the creation of beautiful books
A Leslie Lamport wrote LTEX = LaTeX = Laymans TEX
pronounced lay-tech or lah-tech a document preparation system: plain text + markup a macro package on top of TEX separation of content and style
Preferred by many academic journals Many, many distros (TeXLive, MiKTeX, MacTeX. . . ) More history at http://www.ctan.org/what_is_tex.html
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Why?
Pros and Cons

Pros Free software + Free-of-charge Portable (plain text input; DVI/PS/PDF. . . output) Light, robust, secure, stable, consistent Supports multilingual typesetting, international characters Good for complex, structured documents or lots of maths Good for batch-processing jobs Cons Learning curve Overkill for simple documents Not as suitable for graphic-intensive material (e.g. advertising)
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Why?
Disclaimer
A This is not a Word Processors vs LTEX debate.
Its a hands-on demonstration of an alternative tool. Some word processors also provide mechanisms to handle same routine tasks (with varying degrees of ease, consistency and stability) Use the best tool for the task at hand. You are the best judge to decide for yourself.
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Basics
Agenda
1 2
3 4 5 6 7 8
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Basics
What to Install? (for Windows)
(FOC options here; commercial solutions are available) Essential

A A MiKTEX: LTEX engine for Windows (includes LTEX-friendly editor and
PDF previewer) TeXMaker : Another simple editor JabRef: Java-based GUI bibliography and reference manager
Optional
LaTable: visual table editor to help with complex tables GhostScript, GSView if you work with PostScript outputs
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Basics
Congure MikTeX
We need to congure MikTeX so that it can update & install packages using UNITENs network
Basics
Proxy setting
Set proxy to tmg.uniten.edu.my with port 8080 and checked authentication box
Basics
Authentication
When it asks username and password, enter your UNITENs login

Basics
Package installation
Install new package

Open package manager and search for ieeetran and elsarticle. Click + to install the selected packages.
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Basics
Minimal Document Structure
%% helloworld.tex First LaTeX document
\documentclass{article} \begin{document} Hello World! \end{document}

Standard document classes: article: for short reports, articles in proceedings or journals, etc. book: for real books. report, letter, . . . Other document classes: beamer, scrartcl, memoir, recipe, resume, leaflet, exam, beamerposter. . .
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Basics
A L TEX Workow
1 2 3 4 5 6
Create, edit, save .tex le To publish click in front of PDFLaTeX or you can press F6 Correct errors, repeat publishing (click ) again To view output, click in front of View PDF or you can press F7
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Text
Agenda
1 2
3 4 5 6 7 8
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Text
White Space and New Lines
Space and tab characters

White space does not (usually) matter TEX determines inter-word spacing to ensure legibility
Paragraph breaking
Leave a blank line between text to break paragraph Multiple blank lines wont give more vertical spacing TEX determines inter-line spacing to ensure legibility
Manual line- and page-breaking?

(are you sure?) TEX decides where to break lines, pages to ensure legibility if you insist: \\, \pagebreak
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Text
Special Characters
# $ % & _ { } @
(hash, pound) (dollar) (percent) (hat) (ampersand) (underscore) (left brace) (right brace) (tilde) (wide tilde) (open double quotes) (close double quotes) (alias)
: : : : : : : : : : : : :
\# \$ \% \^{} \& \_ \{ \} \~{} $\sim$ \string@

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Text
Font Families and Effects
\textrm{roman} \textsf{sans serif} \texttt{typewriter}
roman sans serif typewriter
\textbf{bold} bold \textit{italics} italics \underline{underline} underline \textsc{Small Caps} S MALL C APS \emph{emphasis} emphasis
Commands can be nested: \texttt{\emph{Like this.}} Like this.
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Text
Font Sizes
Font size changing commands relative to base font size given in documentclass option
{\tiny Text} Text {\scriptsize Text} Text {\footnotesize Text} Text {\small Text} Text {\normalsize Text} Text {\large Text} Text {\Large Text} Text {\LARGE Text} {\huge Text} {\Huge Text}
Text
Text
Text
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Text
List-like Environments
Bulleted Lists
Numbered Lists
Description Lists
\begin{itemize} \item one \item two \end{itemize}
\begin{enumerate} \item one \item two \end{enumerate}
\begin{description} \item[one] is here \item[two] is there \end{description}
Lists can be nested up to 6 levels deep.
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Structure
Agenda
1 2
3 4 5 6 7 8
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Structure
Sectioning Commands
article: section, subsection, subsubsection. book: part (not usually used), chapter, section, . . .
\documentclass{article} \begin{document} \section{Introduction} Introduce your topic here. \section{Background} A line or two. \subsection{Related Work} Review others work. \subsection{Problems} Unresolved issues. \end{document}
Structure
Cross-referencing
\documentclass{article} \begin{document} \section{Introduction}\label{sec:intro} Introduce your topic here. \section{Background} \label{sec:background} Mention section \ref{sec:intro} again. \subsection{Related Work} \label{sec:related} Review others work. \subsection{Problems} \label{sec:problems} In section \ref{sec:related} on page \pageref{sec:related}\ldots \end{document}
Bookmark with \label, reference with \ref, \pageref
Structure
Other Goodies
Author information (in preamble) \author: Name(s) of authors \title: Title of the article/book/report \date: Specify a date
Other custom elds for respective journals, conference styles (see later)
Routine tasks (in document body)

Abstract:
\begin{abstract} My abstract text here. \end{abstract}
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Structure
Other Goodies (contd)
Footnote: ...why?\footnote{why not?} Margin notes: ...why?\marginpar{why not?} Auto-generate title: \maketitle Auto-generate TOC: \tableofcontents (\listoffigures,\listoftables well try later)
Try \documentclass{scrartcl} for a modern look Non-English: e.g. \usepackage[bahasam]{babel} (Remove aux les before typesetting if you modify this line!) PDF hyperlinks and bookmarks: hyperref package
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Maths
Agenda
1 2
3 4 5 6 7 8
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Maths
Mathematics with amsmath package

\eqref{eq:golden:ratio:fibonacci} relates the golden ratio and the Fibonacci series. Recall that the golden ratio, $\phi = \frac{1}{2} (1 + \sqrt{5})$. \begin{equation}\label{eq:golden:ratio:fibonacci} \phi = 1 + \sum^{\infty} _{n=1} \frac{ (-1)^{n+1} }{ F_n F_{n+1} } \end{equation}
(1) relates the golden ratio and the Fibonacci series. Recall
1 that the golden ratio, = 2 (1 + 5).
= 1+
(1)n+1 n=1 Fn Fn+1
(1)
Source: http://mathworld.wolfram.com/GoldenRatio.html
Figures & Tables
Agenda
1 2
3 4 5 6 7 8
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Figures & Tables
Graphics File Format
pdflatex embeds JPG, PNG and PDF graphic les

\usepackage{graphicx} ... \includegraphics[width=.3\textwidth]{logouniten}
(no le extension automatically looks for .jpg, .png, .pdf)
Other ways to specify the size: width=5cm, height=120mm, scale=1.1 . . .
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Figures & Tables
Figures
\begin{figure}[hbt!]\centering \includegraphics[width=.3\textwidth]{logouniten} \caption{UNITEN s logo} \label{fig:uniten:logo} \end{figure} Figure \ref{fig:uniten:logo} depicts UNITEN s logo.
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Figures & Tables
Tabular Material
\begin{tabular}{| l | c || r |} \hline one & two two & three three tree \\ \hline one one & two two two & three \\ \hline one one one & two & three three \\ \hline\hline \multicolumn{2}{|l||}{In the end} & What?! \\ \hline \end{tabular}
one one one one one one In the end

Prefer a visual editor? Try LaTable
two two two two two two
three three tree three three three What?!
(http://tug.ctan.org/tex-archive/support/latable/)
Figures & Tables
Tables
\begin{table}[hbt!]\centering \caption{Sample table}\label{tab:sample} \begin{tabular}{| l | c || r |} \hline one & two two & three three tree \\ \hline one one & two two two & three \\ \hline \end{tabular} \end{table} Table \ref{tab:sample} is a very simple example.
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References
Agenda
1 2
3 4 5 6 7 8
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References
External (Centralised) Reference Database
latex-refs.bib
@ARTICLE{knuth:1984, author = {Donald E. Knuth}, title = {Literate programming}, journal = {The Computer Journal}, year = {1984}, volume = {27}, number = {2}, pages = {97--111}, address = {Oxford, UK}, publisher = {Oxford University Press} }
JabRef: Java-based reference manager
http://jabref.sourceforge.net
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References
Citing from External .bib File
\documentclass{article} \bibliographystyle{plain} \begin{document} \cite{latex:companion} is a useful book. Knuth introduced the literate programming paradigm while developing \TeX\ \cite{knuth :1984}. \bibliography{latex-refs} \end{document}
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References
Citation & Bibliography Styles

Number System
plain
acm
unsrt
ieeetr
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References
Citation & Bibliography Styles

Author-Year System
alpha
agsm (with natbib package)
apacite (with apacite package)
dcu (with natbib package)
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Journal formating
Agenda
1 2
3 4 5 6 7 8
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Journal formating
IEEE Transactions
\documentclass{IEEEtran} \usepackage{graphicx} \author{Lim Lian Tze and Another Author} \thanks{This work was received January 20, 2010; revised January 30, 2010.} \thanks{Lim Lian Tze is with the Multimedia University. Another Author is with Another University. See http://fit.mmu.edu.my/sig/nlp/ for contact details.} \title{My First Paper} \IEEEpubid{0000--0000/00\$00.00 \copyright 2007 IEEE} \begin{document} \maketitle \begin{abstract} This should be a succinct paragraph summarising your paper.
Journal formating
IEEE Transactions (contd)

\end{abstract} \begin{IEEEkeywords} \LaTeX, typesetting, learning by example. \end{IEEEkeywords}
%% Now your paper begins...
\section{Introduction} ...
%% Use IEEEtran bibliography style
\bibliographystyle{IEEEtran} \bibliography{bibliography-file}
%% Author biographies
\begin{IEEEbiography}[{\includegraphics[width=1in,height=1.25in]{lltgrayscale}}] {Lim Lian Tze} is currently a Ph.D.\ student at the Multimedia University studying Natural Language Processing.
Journal formating
IEEE Transactions (contd)
\end{IEEEbiography} \begin{IEEEbiography}[{\includegraphics[width=1in,height=1.25in]{ another-grayscale}}] {Another Author} is Associate Professor at Another University with a research interest in Natural Language Processing. \end{IEEEbiography} \end{document}
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Journal formating
OSA Journal - Applied Optics

\documentclass[letterpaper,12pt]{article} \usepackage{osajnl2} %% do not use with REVTeX4 \usepackage[draft]{hyperref} %% optional \begin{document} \title{Preparing a manuscript for the Optical Society of America journals JOSA A, JOSA B,, and \textit{Applied Optics} }
%% For REVTeX it is possible to automate superscript and email callouts with the superscriptaddress option; see REVTeX4 documentation. %% LaTeX 2e (preferred)
\author{Joe Richardson,$^{1,*}$ Antoinette Wrighton,$^2$ and Jennifer Mayfield$^{2,3}$} \address{$^1$Peer Review Department, Optical Society of America, \\ 2010 Massachusetts Avenue, NW,
Journal formating
OSA Journal - Applied Optics (contd)

Washington, D.C. 20036, USA} \address{$^2$Editorial Services Department, Optical Society of America, \\ 2010 Massachusetts Avenue, NW, Washington, D.C. 20036, USA} \address{$^3$Currently with the Electronic Journals Department, Optical Society of America, \\ 2010 Massachusetts Avenue, NW, Washington, D.C. 20036, USA} \address{$^*$Corresponding author: xyx@osa.org}
\begin{abstract}Authors should note the new affiliation, reference, and reference callout styles introduced as of 2007. See \texttt{osastyle.tex} for full details. \end{abstract} \ocis{000.0000, 999.9999.}% REPLACE WITH CORRECT OCIS CODES FOR YOUR ARTICLE
% NOTE: \ocis{} IS ALIASED TO \pacs{} BUT MUST % FORMAT THE TERMS CORRECTLY FOR EACH JOURNAL
Journal formating
OSA Journal - Applied Optics (contd)
\maketitle
%% null function with osajnl.sty
\begin{thebibliography}{99} \bibitem[1] . . . \end{thebibliography} \end{document}
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Journal formating
Laser Physics Letter

\documentclass[10pt]{wiley2sp} \usepackage{url} \usepackage{helvet} \usepackage{psfig} \usepackage{times} \def\sectcounterend{.} \def\figurename{Figure}
\setcounter{page}{1} %First page \def\pages{1--5} %Total pages \def\thevol{1} %Vol.Number \def\thenumber{1} %Vol. SubNumber \def\theyear{2004} %Year of publication \def\thedoi{20040001} %DOINumber \begin{document}
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Journal formating
Laser Physics Letter (contd)

\titlefigure[clip,width=.8\columnwidth] {fig2.eps} %< insert gure name \abstract{%% <insert abstract text } \titlefigurecaption{%<insert gure text } \title{%%<insert title text } \author{%First author,\inst{1}<insert author names
%Second Author\inst{2}
} \institute{%Address of rst author \and

Journal formating

%Address of second author
\and
%Address of third author
} \mail{e-mail: xxx@xxxx.xxx}%<insert Email address

%of corresponding author
\received{$\clubsuit$%<date to be completed by publisher } \keywords{%<insert some Keywords } \titlerunning{%<insert a shorttitle } \authorrunning{%First author, second author
Journal formating

} \pacs{%<insert some PACSnumbers } \published{$\clubsuit$%<date to be completed by publisher } \maketitle \sloppy \section{%Chapter 1 }
%Text...
\subsection{%Chapter 1.1 }
%Text
\subsubsection{%Chapter 1.1.1
Journal formating

}
%Text %%%%%%%%%%%%%%%%%%%Float environment (Figures and tables)%%%%%%%%%%%%%%% %%%%%%%%%%%%%%%Onecolumn gures%%%%%%%%%%%%%%%%%%%%%%%%%%
\begin{figure}[t]%Onecolumn gure on top of the page \begin{figure}[b]%Onecolumn gure at the bottom of the page \begin{figure}[h]%Onecolumn gure right here (if possible) \caption{%<insert gure caption (optional) } \end{figure}
%%%%%%%%%%%%%%%Twocolumn gures (use "{gure*}"
\begin{figure*} \caption{%<insert gure caption (optional) } \end{figure*}
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Journal formating

%%%%%%%%%%%%%%%Onecolumn tables%%%%%%%%%%%%%%%%%%%%%%%%%%
\begin{table}[t]%Onecolumn table on top of the page \begin{table}[b]%Onecolumn table at the bottom of the page \begin{table}[h]%Onecolumn table right here (if possible) \caption{%<insert table caption (optional) }
%Tabletext
\end{table}
%%%%%%%%%%%%%%%Twocolumn tables (produced with "{table*}"
\begin{table*} \caption{%<insert table caption (optional) }

%Tabletext
\end{table*}
%%%%%%%%%%%%%%%%Bibliography environment%%%%%%%%%%%%%%%
Journal formating
\begin{thebibliography}{26}<--------total number of citations \bibitem{a} \bibitem{b} . . . \bibitem{z} \end{thebibliography} \end{document}
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Journal formating
IOP
\documentclass[12pt]{iopart} \newcommand{\gguide}{{\it Preparing graphics for IOP journals}}
%Uncomment next line if AMS fonts required %\usepackage{iopams}
\begin{document} \title[Author guidelines for IOP journals in \LaTeXe]{How to prepare and submit an article for publication in an IOP journal using \LaTeXe} \author{} \address{IOP Publishing, Dirac House, Temple Back, Bristol BS1 6BE, UK} \ead{custserv@iop.org} \begin{abstract}
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Journal formating
IOP (contd)
\end{abstract}
%Uncomment for PACS numbers title message %\pacs{00.00, 20.00, 42.10} % Keywords required only for MST, PB, PMB, PM, JOA, JOB? %\vspace{2pc} %\noindent{\it Keywords}: Article preparation, IOP journals % Uncomment for Submitted to journal title message %\submitto{\JPA} % Comment out if separate title page not required
\maketitle \section{Introduction: file preparation and submission} . . . \section*{References} \begin{thebibliography}{10}

Journal formating
IOP (contd)
\bibitem{book1} Goosens M, Rahtz S and Mittelbach F 1997 {\it The \LaTeX\ Graphics Companion\/} (Reading, MA: Addison-Wesley) \bibitem{eps} Reckdahl K 1997 {\it Using Imported Graphics in \LaTeX\ } (search CTAN for the file epslatex.pdf ) \end{thebibliography} \end{document}
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Journal formating
Elsevier
\documentclass[preprint,12pt]{elsarticle}
%% Use the option review to obtain double line spacing %% \documentclass[authoryear,preprint,review,12pt]{elsarticle} %% Use the options 1p,twocolumn; 3p; 3p,twocolumn; 5p; or 5p,twocolumn %% for a journal layout: %% \documentclass[nal,1p,times]{elsarticle} %% \documentclass[nal,1p,times,twocolumn]{elsarticle} %% \documentclass[nal,3p,times]{elsarticle} %% \documentclass[nal,3p,times,twocolumn]{elsarticle} %% \documentclass[nal,5p,times]{elsarticle} %% \documentclass[nal,5p,times,twocolumn]{elsarticle} %% For including gures, graphicx.sty has been loaded in %% elsarticle.cls. If you prefer to use the old commands %% please give \usepackage{epsg}
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Journal formating
Elsevier (contd)
%% The amssymb package provides various useful mathematical symbols
\usepackage{amssymb}
%% The amsthm package provides extended theorem environments %% \usepackage{amsthm} %% The lineno packages adds line numbers. Start line numbering with %% \begin{linenumbers}, end it with \end{linenumbers}. Or switch it on %% for the whole article with \linenumbers. %% \usepackage{lineno}
\journal{Nuclear Physics B} \begin{document} \begin{frontmatter}

%% Title, authors and addresses %% use the tnoteref command within \title for footnotes;
Journal formating
Elsevier (contd)
%% use the tnotetext command for theassociated footnote; %% use the fnref command within \author or \address for footnotes; %% use the fntext command for theassociated footnote; %% use the corref command within \author for corresponding author footnotes; %% use the cortext command for theassociated footnote; %% use the ead command for the email address, %% and the form \ead[url] for the home page: %% \title{Title\tnoteref{label1}} %% \tnotetext[label1]{} %% \author{Name\corref{cor1}\fnref{label2}} %% \ead{email address} %% \ead[url]{home page} %% \fntext[label2]{} %% \cortext[cor1]{} %% \address{Address\fnref{label3}} %% \fntext[label3]{}
\title{}
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Journal formating
Elsevier (contd)
%% use optional labels to link authors explicitly to addresses: %% \author[label1,label2]{} %% \address[label1]{} %% \address[label2]{}
\author{} \address{} \begin{abstract}

%% Text of abstract
\end{abstract} \begin{keyword}
%% keywords here, in the form: keyword \sep keyword %% PACS codes here, in the form: \PACS code \sep code
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Journal formating
Elsevier (contd)
%% MSC codes here, in the form: \MSC code \sep code %% or \MSC[2008] code \sep code (2000 is the default)
\end{keyword} \end{frontmatter}
%% \linenumbers %% main text
\section{} \label{}
%% The Appendices part is started with the command \appendix; %% appendix sections are then done as normal sections %% \appendix %% \section{} %% \label{}
Journal formating
Elsevier (contd)
%% If you have bibdatabase le and want bibtex to generate the %% bibitems, please use %% %% \bibliographystyle{elsarticlenum} %% \bibliography{<your bibdatabase>} %% else use the following coding to input the bibitems directly in the %% TeX le.
\begin{thebibliography}{00}
%% \bibitem{label} %% Text of bibliographic item
\bibitem{} \end{thebibliography} \end{document}

Journal formating
Elsevier (contd)
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Journal formating
Credit roll
Credit goes to Lim Lian Tze (USM) for the slides content and formatting
A This presentation is created with LTEX with Beamer package using
CambridgeUS and dolphin theme.
THANK YOU!
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A Using L TEX to prepare manuscript for submission

February 14, 2012

Fairuz Abd (TuGUNITEN)

February 14, 2012

Fairuz Abd (TuGUNITEN)

February 14, 2012

Fairuz Abd (TuGUNITEN)

February 14, 2012

Concerns when writing a paper/thesis. . .

Donald Knuth created TEX = TeX (from Greek art; craft)

Fairuz Abd (TuGUNITEN)

February 14, 2012

Pros and Cons

Fairuz Abd (TuGUNITEN)

February 14, 2012

A This is not a Word Processors vs LTEX debate.

Fairuz Abd (TuGUNITEN)

February 14, 2012

Fairuz Abd (TuGUNITEN)

February 14, 2012

What to Install? (for Windows)

(FOC options here; commercial solutions are available) Essential

Fairuz Abd (TuGUNITEN)

February 14, 2012

When it asks username and password, enter your UNITENs login

Install new package

Fairuz Abd (TuGUNITEN)

February 14, 2012

Minimal Document Structure

%% helloworld.tex First LaTeX document

\documentclass{article} \begin{document} Hello World! \end{document}

Fairuz Abd (TuGUNITEN)

February 14, 2012

Fairuz Abd (TuGUNITEN)

February 14, 2012

Fairuz Abd (TuGUNITEN)

February 14, 2012

White Space and New Lines

Space and tab characters

Manual line- and page-breaking?

Fairuz Abd (TuGUNITEN)

February 14, 2012

\# \$ \% \^{} \& \_ \{ \} \~{} $\sim$ \string@

Font Families and Effects

\textrm{roman} \textsf{sans serif} \texttt{typewriter}

roman sans serif typewriter

Fairuz Abd (TuGUNITEN)

February 14, 2012

Fairuz Abd (TuGUNITEN)

\begin{itemize} \item one \item two \end{itemize}

\begin{enumerate} \item one \item two \end{enumerate}

\begin{description} \item[one] is here \item[two] is there \end{description}

Lists can be nested up to 6 levels deep.

Fairuz Abd (TuGUNITEN)

February 14, 2012

Fairuz Abd (TuGUNITEN)

February 14, 2012

Bookmark with \label, reference with \ref, \pageref

Routine tasks (in document body)

\begin{abstract} My abstract text here. \end{abstract}

Fairuz Abd (TuGUNITEN)

February 14, 2012

Other Goodies (contd)

\begin{figure} \caption{%<insert gure caption (optional) } \end{figure}