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• Saturated compounds have C’s bonded to each other by single bonds, C-C;
• Cyclic compounds having at least one atom in the ring other than C (a
1) DNA: the giant molecules that contain all the genetic information
• Billion years ago most of the carbon atoms on the earth existed as
CH4:
1) CH4, H2O, NH3, H2 were the main components of the primordial atmosphere.
these simple compounds to fragment into highly reactive pieces which combine
3) Amino acids reacted with each other to form the first protein.
4) Formaldehyde reacted with each other to become sugars, and some of these
DNA.
4. We live in an Age of Organic Chemistry:
1) clothing: natural or synthetic substance.
2) household items:
3) automobiles:
4) medicines:
5) pesticides:
5. Pollutions:
1) insecticides:
2) PCBs:
3) dioxins:
4) CFCs:
TYPES OF BONDS
TYPES OF BONDS
• An ionic bond is an attractive force between oppositely charged ions.
• Ionic compounds are generally inorganic; have high melting and boiling points due to
the strong electrostatic forces attracting the oppositely charged ions; are soluble in
water and insoluble in organic solvents; are hard to burn; involve reactions that are rapid
and simple; also bonds between like elements are rare, with isomerism being unusual.
• Covalent compounds, on the other hand, are commonly organic; have relatively low
melting and boiling points because of weak intermolecular forces; are soluble in organic
solvents and insoluble in water; bum readily and are thus susceptible to oxidation
because they are less stable to heat, usually decomposing at temperatures above 700°C;
involve reactions that are slow and complex, often needing higher temperatures and/or
catalysts, yielding mixtures of products; also, honds between carbon atoms are typical,
TYPES OF BONDS
• Electronegativity is a measure of the ability of an atom to attract electrons
FORMAL CHARGE
• The formal charge on a covalently bonded atom equals the number of valence
electrons of the unbonded atom (the Group number) minus the number of electrons
assigned to the atom in its bonded state.
• The assigned number is one half the number of shared electrons plus the total
number of unshared electrons.
• Elements are made up of atoms. An atom (Fig. 1.1) consists of a dense, positively
charged nucleus containing protons and neutrons and a surrounding cloud of
electrons.
• The elements commonly found in organic molecules are carbon, hydrogen, nitrogen,
oxygen, phosphorus, and sulfur, as well as the halogens: fluorine, chlorine, bromine,
and iodine.
• Isotopes:- the existence of atoms of the same element that have different masses.
• Although all the nuclei of all atoms of the same element will have the same
number of protons, some atoms of the same element may have different masses
because they have different numbers of neutrons. Such atoms are called
isotopes.
TYPES OF BONDS
Isomers: The Importance of Structural Formulas
• Constitutional isomers are different compounds that have the same molecular
formula but differ in the sequence in which their atoms are bonded, that is, in
their connectivity.
Resonance theory. This theory states that whenever a molecule or ion can be
represented by two or more Lewis structures that differ only in the positions of
the electrons.
Atomic and Molecular Structure
Quantum Mechanics and Atomic Structure
• Each wave function (c) corresponds to a different energy state for an electron.
• Each energy state is a sublevel where one or two electrons can reside.
• The energy associated with the state of an electron can be calculated from the
wave function.
• The phase sign of a wave equation indicates whether the solution is positive or
negative when calculated for a given point in space relative to the nucleus.
• Wave functions, whether they are for sound waves, lake waves, or the energy of an
electron, have the possibility of constructive interference and destructive
interference.
• Constructive interference occurs when wave functions with the same phase sign
interact. There is a reinforcing effect and the amplitude of the wave function
increases.
• Destructive interference occurs when wave functions with opposite phase signs
interact. There is a subtractive effect and the amplitude of the wave function goes
to zero or changes sign.
Atomic and Molecular Structure
Atomic and Molecular Structure
A physical interpretation related to the electron wave function was put forth by Max
Born in 1926, as follows.
The square of a wave function (Ψ2) for a particular x,y,z location expresses the
probability of finding an electron at that location in space.
Conversely, if Ψ2 for some other volume of space is small, the probability of finding
an electron there is low.* This leads to the general definition of an orbital and, by
extension, to the familiar shapes of atomic orbitals.
• Atomic orbitals are plots of Ψ2 in three dimensions. These plots generate the
familiar s,p, and d orbital shapes.
Atomic and Molecular Structure
Three principles are used to distribute electrons in orbitals.
2. Pauli exclusion principle. No more than two electrons can occupy an orbital and
then only if they have opposite spins.
• A covalent bond forms by overlap (fusion) of two AO’s-one from each atom.
• This overlap produces a new orbital, called a molecular orbital (MO), which embraces both
atoms. The interaction of two AO’s can produce two kinds of MO’s.
• If orbitals with like signs overlap, a bonding MO results which has a high electron density
between the atoms and therefore has a lower energy (greater stability) than the individual
AO’s.
• If AO’s of unlike signs overlap, an antiboding MO* results which has a node (site of zero
electron density) between the atoms and therefore has a higher energy than the individual
AO’s. Asterisk indicates antibonding.
• What we have just described has its counterpart in a mathematical treatment called the LCAO (linear
combination of atomic orbitals) method. In the LCAO treatment, wave functions for the atomic orbitals
are combined in a linear fashion (by addition or subtraction) in order to obtain new wave functions for
the molecular orbitals.
Atomic and Molecular Structure
• Orbital hybridization, in its simplest terms, is nothing more than a mathematical approach that involves
the combining of individual wave functions for s and p orbitals to obtain wave functions for new orbitals.
• The new orbitals have, in varying proportions, the properties of the original orbitals taken separately.
These new orbitals are called hybrid atomic orbitals.
• According to quantum mechanics, the electronic configuration of a carbon atom in its lowest energy
state—called the ground state.
• Wave functions for the 2s, 2px, 2py, and 2pz orbitals of ground state carbon are mixed to form four new
and equivalent 2sp3 hybrid orbitals.
• The designation sp3 signifies that the hybrid orbital has one part s orbital character
and three parts p orbital character.
• The mathematical result is that the four 2sp3 orbitals are oriented at angles of 109.5° with respect to each
other. This is precisely the orientation of the four hydrogen atoms of methane. Each H C H 99 bond angle
is 109.5°.
• The Structure of Ethene (Ethylene): sp2 Hybridization
• The mathematical mixing of orbitals that furnish the sp2 orbitals for our model can be visualized in the
way shown in Fig. 1.21.
• The 2s orbital is mathematically mixed (or hybridized) with two of the 2p orbitals. (The hybridization
procedure applies only to the orbitals, not to the electrons.)
• One 2p orbital is left unhybridized. One electron is then placed in each of the sp2 hybrid orbitals and one
electron remains in the 2p orbital.
• The three sp2 orbitals that result from hybridization are directed toward the corners of hybridized is
perpendicular to the plane of the triangle formed by the hybrid sp2 orbitals.
a regular triangle (with angles of 120° between them). The carbon p orbital that is not
Development of the Science of Organic Chemistry
The science of organic chemistry began to flower with the demise of a nineteenth
century theory called vitalism.
According to vitalism, organic compounds were only those that came from living
organisms, and only living things could synthesize organic compounds through
intervention of a vital force.
Inorganic compounds were considered those compounds that came from nonliving
sources.
• Exceptions:
– oxides of carbon (CO2, CO)
– carbonates,bicarbonates(NaHCO3,CaCO3)
– cyanides (NaCN, etc)
Alkynes C C Aromatics H
CnH2n-2 H C H
H H H C C
H C C C C C H C C
H C H
H H H
H
1.5. Functional Groups
1.5. Functional Groups
1.5. Functional Group
a structural unit in a molecule responsible for its characteristic
chemical behavior and its spectroscopic characteristics.
• Organic compounds having only C—C and C—H bonds are called
Hydrocarbons. There are four classes of hydrocarbons: alkanes,
alkenes, akynes and aromatics. Alkanes are saturated structures and
the others contain unsaturations.
Don’t think that the C—C and C—H bonds are unimportant. They
form the carbon backbone or skeleton to which the functional group is
attached. 28
1.5. Functional Groups
• A functional group determines all of the following properties of a
molecule:
Bonding and shape
Chemical reactivity
Type and strength of intermolecular forces
Physical properties
Nomenclature
1.5. Functional Groups
Intermolecular Forces:
• Intermolecular forces are interactions that exist between
molecules. Functional groups determine the type and
strength of these interactions.
• There are several types of intermolecular interactions.
• Ionic compounds contain
oppositely charged particles held
together by extremely strong
electrostatic inter-actions. These
ionic inter-actions are much
stronger than the intermolecular
forces present between covalent
molecules.
30
1.5. Functional Groups
Intermolecular Forces:
dipole-dipole interactions
hydrogen bonding
31
Functional Groups
Intermolecular Forces: van der Waals Forces
• van der Waals forces are also known as London forces.
• They are weak interactions caused by momentary changes in electron
density in a molecule.
• They are the only attractive forces present in nonpolar compounds.
33
Functional Groups
Intermolecular Forces: van der Waals Forces
• van der Waals forces are also affected by polarizability.
• Polarizability is a measure of how the electron cloud around an atom
responds to changes in its electronic environment.
34
Functional Groups
Intermolecular Forces: Dipole-Dipole Interactions
• Dipole—dipole interactions are the attractive forces between the
permanent dipoles of two polar molecules.
• Consider acetone (below). The dipoles in adjacent molecules align so
that the partial positive and partial negative charges are in close
proximity. These attractive forces caused by permanent dipoles are
much stronger than weak van der Waals forces.
35
Functional Groups
36
Functional Groups
Intermolecular Forces: Summary
Note: as the polarity of an organic molecule increases, so does
the strength of its intermolecular forces.
37
Functional Groups
Physical Properties: Solubility
• The nonpolar part of a molecule that is not attracted to
H2O is said to be hydrophobic.
• The polar part of a molecule that can hydrogen bond to
H2O is said to be hydrophilic.
• In cholesterol, for example, the hydroxy group is
hydrophilic, whereas the carbon skeleton is
hydrophobic.
Figure 3.5
Solubility
summary
38
Properties of Alkanes
• Because alkanes are generally less dense than water, they float on its surface.
• Low-molecular-weight alkanes are volatile and must be handled with care because
their vapors are flammable.
• Mixtures of alkane vapors and air can explode when ignited by a single spark.
• Mineral oil, petroleum jelly, and paraffin wax are mixtures of higher alkanes. All are
harmless to body tissue and are used in numerous food and medical applications.
• Nonpolar, insoluble in water but soluble in nonpolar organic solvents, less dense
than water
Chapter 2 42
Reactions of Alkanes
Combustion
• The reaction of an alkane with oxygen is called combustion, an oxidation reaction that
commonly takes place in a controlled manner in an engine or furnace.
• Carbon dioxide and water are the products of complete combustion of any hydrocarbon, and a
large amount of heat is released.
Halogenation
• Halogenation is the replacement of an alkane hydrogen by a chlorine or bromine initiated by
heat or light.
• Halogenation is used to prepare a number of key industrial solvents, as well as other
molecules that are used for the preparation of other larger organic molecules.
• In a halogenation reaction, only one H at a time is replaced. If allowed to react for a long
enough time, all H’s will be replaced with halogens.
• A cycloalkane is an alkane that contains a ring of carbon atoms.
• To form a closed ring requires an additional C–C bond and the loss of 2 H atoms.
• Compounds of ring sizes from 3 through 30 and beyond have been prepared in the laboratory.
• The C–C–C bond angles in cyclopropane are 60°, and the bond angles in cyclobutane are
90°, much less than the ideal 109.5° tetrahedral angle.
• These compounds are less stable and more reactive than other cycloalkanes.
Nomenclature of Branched-Chain Alkanes
1. Locate the longest continuous chain of carbon atoms; this chain determines the parent name
2. Number the longest chain beginning with the end of the chain nearer the substituent.
3. Use the numbers obtained by application of rule 2 to designate the location of the substituent
group.
4. When two or more substituents are present, give each substituent a number corresponding to
5. When two substituents are present on the same carbon atom, use that number twice:
6. When two or more substituents are identical, indicate this by the use of the prefixes di-, tri-,
7. When two chains of equal length compete for selection as the parent chain, choose the chain
We name compounds containing two fused or bridged rings as bicycloalkanes, and we use the name of the
alkane corresponding to the total number of carbon atoms in the rings as the parent name. The following
compound, for example, contains seven carbon atoms and is, therefore, a bicycloheptane. The carbon atoms
common to both rings are called bridgeheads, and each bond, or each chain of atoms, connecting the
Then we interpose an expression in brackets within the name that denotes the number of carbon atoms in
each bridge (in order of decreasing length). Fused rings have zero carbons in the bridge. For example,
If substituents are present, we number the bridged ring system beginning at one bridgehead, proceeding first
along the longest bridge to the other bridgehead, then along the next longest bridge back to the first
• CH3CH(CH3)C CCH(CH3)CH3
• CH CC(CH3)(CH3)CH3
• CH3CH=CHCH=CHC CCH3
• CH3CH2C(CH3)(CH3)C CCH2CH2CH3
Reactions of Alkenes and Alkynes. . .
• Addition reactions: double bond broken and new bonds
formed to atoms added.
– Hydrogenation reactions: addition of hydrogen atoms
– Halogenation: addition of a halogen
• Elimination:one reactant splits apart to give two products.
• Substitutions: two reactants exchange parts to give two new
products.
• Rearrangement:one reactant undergoes a reorganization of
bonds and atoms to give a new product.
Aromatic Hydrocarbons. . .
Benzene and its structural relatives
• 2-ethyl-2-buten-1-ol
• 3-cyclohexen-1-ol
• trans-3-chlorocycloheptanol
• 1,4-pentanedio
l CH3
4,4-dimethylcyclohexanol
OH
CH3
CH2CH2C(OH)(CH3)2
2-methyl-4-phenyl-2-butanol
Four different alcohols.
The IUPAC name is given
above each structural
formula, and the common
name is given below.
The OH group is polar and short chain
alcohols are soluble in both non-polar
alkanes and water.
If an alcohol contains two OH groups it
is a diol (sometimes called a glycol).
An alcohol with three OH groups is
called a triol (sometimes called a glycerol).
Common
examples of
alcohols with one,
two, and three
hydroxyl groups
per molecule.
The IUPAC name
is given above
each structural
formula, and the
common name is
given below.
Preparation of Alcohols:-
Preparation of Alcohols:-
Aldehydes. . .
CHO
Cyclohexanecarbaldehyde
Ketones. . .
• Contain carbonyl group bonded to two carbon atoms
• Final –e replaced with -one.
• Longest chain with ketone group is the parent.
• Numbering begins at the end nearest the carbonyl
carbon.
• If ketones is the substituent group, -acyl is used and
the name ending –yl is attached.
Practice. . .
• OHCCH2CH2CH2CHO
• Pentanedial
• CH3CH2CH(CH3)CH(CH2CH2CH3)COCH3
• 4-methyl-3propyl-2-hexanone
• CH3CH=CHCH2CH2CHO
• 4-hexenal
• 3-methylbutanal
• 3-methyl-3-butenal
• 4-chloro-2-pentanone
Carboxylic Acids. . .
• Two systems:
• Derived from open chain alkanes:
– Carboxyl carbon is always C1.
– Replace terminal –e of alkane with –oic acid.
– -COOH group bonded to a ring, the suffix –carboxylic acid is used.
– The carboxylic acid carbon is attached to C1 and is not itself numbered
in this system.
– Organic acids are those
PREPARATION OF CARBOXYLIC ACIDS
1. Oxidation of 1o Alcohols, Aldehydes, and Arenes
COOH
3-bromocyclohexanecarboxylic acid
Br
COOH
1-cyclopentenecarboxylic acid
Methylphenylamine Cyclohexyldimethylamine
1-Butanamine
2-Butanamine
Structure and classification of amines
• For di- and trisubstituted amines, the non-parent chains are indicated as N-bonded:
N,N-Dimethyl-1-propanamine
N-Ethyl-N-methyl-2-butanamine
1,4-Butanediamine
• And for cases where NH2-substituted alcohols or other compound cases are
involved, the NH2-group is called an “amino” substituent.
3-Aminobutanoic acid
4-Amino-4-chloro-2-pentanone
Nomenclature of Amides
• Aromatic amines involve an amine-type nitrogen
bound to an aromatic ring. The simplest case for
these is aniline.
Aniline 3-Bromo-2-chloroaniline
Propanamide N-Methylbutnamide
N,N-Diethyl-3-methylbutanamide
Benzamide N,N-Dimethylbenzamide
N,N,3,5-Tetramethylbenzamide
• Barbiturates derive from barbituric acid (sedatives/tranquilizers) are cyclic amides, made
from urea and malonic acid:
2H2O
Urea
Pentanedioic acid
Malonic acid
Barbituric acid
Methanamide
N-Methylmethanamide N,N-Dimethylmethanamide
100 oC
H2O
catalyst
• Reactions that make esters from carboxylic acids and alcohols are called esterification
reactions.
• Reactions that make amides from carboxylic acids and amines (or ammonia) are called
amidification reactions.
• Thus amidification reactions are condensation reactions.
Amide hydrolysis
heat
amide carboxylic acid amine
(derivative?) (derivative?)